| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0945 |
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| Symbol | |
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| ID | 5194906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1069913 |
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| End bp | 1072957 |
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| Gene Length | 3045 bp |
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| Protein Length | 1014 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640585403 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_001266290 |
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| Protein GI | 148546188 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTCA CCGACCCGTT CATCCGCCGC CCGGTGCTGG CCAGCGTGGT CAGCCTGCTG
ATTCTGCTGC TCGGCTTCCA GGCCTGGAAC AAGCTGCAGA TCCGCCAGTA CCCGCAAATG
GAAAACGCCC TGATTACGGT CACCACCGCC TACCCCGGGG CCAACGCCGA AACCATTCAG
GGCTATATCA CCCAGCCATT GCAGCAAAGC CTGGCCAGCG CCGAAGGCAT TGACTACATG
ACCTCGGTGA GCCGGCAGAA CTTCTCGATC ATTTCCATTT ACGCGCGCGT TGGCGCCGAC
AGCGACCGGC TGTTCACCGA ACTGCTGGCC AAGGCCAATG AGGTGCGTAA CAAGCTTCCC
CAGGACTCAG AAGACCCAGT ACTGAGCAAG GAAGCTGCCG ACGCCTCGGC GCTGATGTAC
GTCAGCTTCT ACAGCAAGGA AATGAGCAAC CCGCAGATCA CCGACTACCT GTCACGTGTT
ATCCAGCCCA AGCTGGCCAC TTTGCCGGGC ATGGCCGAGG CGGAGATCCT CGGCAATCAA
GTGTTCGCCA TGCGCCTTTG GCTGGACCCG GTGAAGCTGG CCGGTTTCGG CCTTTCGGCT
ACCGACGTGA CCAATGCCGT ACGCCGCTAC AACTTCCTTT CCGCCGCTGG CGAGGTGAAA
GGCGAATACG TGGTCACCAG CGTCAACGCC AGCACCGAAC TGAAGTCGGC CGAGGCATTC
GCCGCCCTGC CGCTCAAGAC CAGCGGTGAC AGCCGCGTGC TGCTGGGCGA TGTGGCGCGG
GTCGAGATGG GCGCAGAAAA CTACGACACG GTCAGCTCGT TCGACGGCAC CCCGTCGGTC
TATATCGGCA TCAAGGCCAC CCCGGCCGCC AACCCACTGG ATGTCATCAA AGAAGTGCGG
CGCATCATGC CTGAGCTGGA AAGCCAGCTG CCGTCGGCAT TGAAAGTGTC GATTGCCTAC
GACGCCACGC GGTTCATCCA GGCCTCGATC GACGAAGTGA TCAAGACCCT GGGCGAAGCG
GTGCTGATCG TCATCGTGGT GGTGTTCCTG TTCCTCGGTG CCCTGCGCTC GGTACTGATT
CCGGTGGTGA CCATACCGCT GTCGATGATC GGTGTACTGT TCTTCATGCA GATGATGGGC
TACTCGCTCA ACCTGCTGAC CCTGCTCGCC ATGGTGCTGG CCATCGGCCT GGTGGTGGAC
GATGCCATTG TGGTGGTGGA AAACATTCAC CGGCACATGG AAGAAGGCAA GTCGCCGTTC
GACGCAGCCC TGGAAGGCGC GCGCGAAATT GCCATGCCAG TGGTGTCCAT GACCATCACC
CTTGCCGCCG TGTATGCACC GATCGGCTTC CTCACCGGGC TCACCGGCGC GCTGTTCAAG
GAGTTTGCCC TGACGCTGGC CGGGGCGGTG GTCATTTCCG GTATCGTTGC CCTGACCCTG
TCACCGATGA TGTGCGCCCT GCTGCTGCGC CGGGAGCAGA ACCCGAGCGG CCTGGCCCAC
CGCCTCGACC AGCTGTTCGA ACGCCTGAAA GGGCGCTACC AGCGCGTGCT GCACGCCACC
CTCGACAGCC GGCCGGTGGT GCTGGTGTTT GCCGTGATCA TCCTGTGCCT GATCCCGGTG
CTGCTCAAAT TCACCCAGAA CGAACTGGCG CCCAACGAGG ACCAGGGGGT GATTTTCATG
ATGAGCAGCT CGCCTCAACC GGCCAACCTC GACTACCTCA ACGCCTACAC CGACCAGTTC
ACACCGCTGT TCAAGGCCTT CCCCGAGTAT TACTCGTCGT TTCAGATCAA CGGCTTCAAC
GGCGTGCAGA CTGGTATCGG TGGTTTTTTG CTCAAGCCCT GGAACGAGCG CGAACGCACA
CAGATGGAGC TACTGCCGCT GGTGCAGGCC AAACTCGAGG AAATCAGCGG GCTGCAGATC
TTCGGCTTCA ACCTGCCGTC GTTGCCCGGC ACTGGCGAGG GCTTGCCATT CCAGTTTGTG
ATCAATACCG CTGGCGACTA CCCGGCACTG CTGGACGTGG CCCAGCGCAT CAAGACGCGC
GCTCAGGCAT CGGGCAAGTT CGCCTTCCTC GATATCGATC TTGCCTTCGA CAAGCCCGAA
GTGGTGGTGG ACATCGACCG GGCAAAGGCG GCGCAGATGG GGGTGTCGAT GGACACCCTC
GGCGGCACCC TGGCGACCCT GCTGGGCGAG GCGGAAATCA ACCGCTTCAC CCTTGAAGGC
CGCAGTTACA AGGTGATCGC CCAGGTTGAA CGGCCTTACC GCGACAACCC CGGCTGGCTG
AACAATTACT ACGTGAAGAA CGAGCAGGGT CAGTTGTTGC CGCTGTCGAC CCTGATCACC
CTCACCGACC GCGCTCGCCC ACGCCAGCTC AACCAGTTCC AGCAACTGAA CGCTGCGATC
ATCCAGGGCG TACCCATGGT CAGCCTGGGC GAGGCACTGA AGACCGTGCA GGACATCGCT
CGCGAAGAGG CCCCAGAGGG CTTTGCCTTC GACTACGCCG GCGTGGCCCG CCAGTATGTG
CAGGAAGGCA GCGCATTGTG GGTCACCTTC GGCCTGGCGC TGGCGATCAT TTTCCTCGTG
CTGGCTGCAC AGTTCGAAAG CTTCCGCGAC CCGTTGGTGA TTCTGGTGAC AGTGCCGTTG
TCCATCTGTG GCGCGCTTTT GCCGCTGTTC CTGGGTGTGT CGAGCATGAA CATCTACACC
CAGGTCGGGC TGGTGACATT GATCGGGCTT ATCAGCAAGC ACGGAATCCT GATCGTCGAG
TTCGCCAATC AGCTACGCGA TGAGCGTGGC CTAAGTGTGC GCGAAGCGAT CGAGGAAGCA
GCGGCCATTC GCCTGCGGCC GGTGCTGATG ACCACCGCGG CGATGGTGTT CGGCATGGTG
CCGCTGATTC TGGCAACCGG GGCGGGAGCG GTCAGCCGAT TTGACATCGG TATGGTGATT
GCCACCGGGA TGTCGATTGG CACGCTGTTT ACCTTGTTTG TGTTGCCGTG CGTCTACACC
CTGCTGGCGC ACAAGGCGAG CGCCAAGGCA CCTGCAATCG CTTGA
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| Protein sequence | MAFTDPFIRR PVLASVVSLL ILLLGFQAWN KLQIRQYPQM ENALITVTTA YPGANAETIQ
GYITQPLQQS LASAEGIDYM TSVSRQNFSI ISIYARVGAD SDRLFTELLA KANEVRNKLP
QDSEDPVLSK EAADASALMY VSFYSKEMSN PQITDYLSRV IQPKLATLPG MAEAEILGNQ
VFAMRLWLDP VKLAGFGLSA TDVTNAVRRY NFLSAAGEVK GEYVVTSVNA STELKSAEAF
AALPLKTSGD SRVLLGDVAR VEMGAENYDT VSSFDGTPSV YIGIKATPAA NPLDVIKEVR
RIMPELESQL PSALKVSIAY DATRFIQASI DEVIKTLGEA VLIVIVVVFL FLGALRSVLI
PVVTIPLSMI GVLFFMQMMG YSLNLLTLLA MVLAIGLVVD DAIVVVENIH RHMEEGKSPF
DAALEGAREI AMPVVSMTIT LAAVYAPIGF LTGLTGALFK EFALTLAGAV VISGIVALTL
SPMMCALLLR REQNPSGLAH RLDQLFERLK GRYQRVLHAT LDSRPVVLVF AVIILCLIPV
LLKFTQNELA PNEDQGVIFM MSSSPQPANL DYLNAYTDQF TPLFKAFPEY YSSFQINGFN
GVQTGIGGFL LKPWNERERT QMELLPLVQA KLEEISGLQI FGFNLPSLPG TGEGLPFQFV
INTAGDYPAL LDVAQRIKTR AQASGKFAFL DIDLAFDKPE VVVDIDRAKA AQMGVSMDTL
GGTLATLLGE AEINRFTLEG RSYKVIAQVE RPYRDNPGWL NNYYVKNEQG QLLPLSTLIT
LTDRARPRQL NQFQQLNAAI IQGVPMVSLG EALKTVQDIA REEAPEGFAF DYAGVARQYV
QEGSALWVTF GLALAIIFLV LAAQFESFRD PLVILVTVPL SICGALLPLF LGVSSMNIYT
QVGLVTLIGL ISKHGILIVE FANQLRDERG LSVREAIEEA AAIRLRPVLM TTAAMVFGMV
PLILATGAGA VSRFDIGMVI ATGMSIGTLF TLFVLPCVYT LLAHKASAKA PAIA
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