| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0895 |
|---|
| Symbol | |
|---|
| ID | 5191045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1018451 |
|---|
| End bp | 1018948 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640585354 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001266241 |
|---|
| Protein GI | 148546139 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.248298 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCGA CCGTGTCCGG ACACAAAGGC TTCCTCGACC ATTACCATGA GCTGATCGGC
ACCTGGACGC GCAAGCTGCG CAGTCGTCAG CAGGCCGAGG ACCTCACCCA CGATGCCTTT
GTCCGGGTAC TGGAAACCCC GCGCGAGCAG GTTGAGCAGC CACGCGCCTA CCTGCATCAG
GCTGCGCGCA ACATCGCTGT GGATGGCTTC CGTCGCGAAG ACCGCCGCCA GGCCCTGGAG
CGGGAAGCCT TCGAAGAAGG CGCAACCGGC AGTGGCGACC CGGAAGCCTA CGTGCATGCC
CTGGAGCTGG CCGACAGCGT CGAGCGGGCC CTGGCCGAGC TGCCACTCAA CTGCCGGCAG
GTGTTCATCT GGCAGAAGCT CGAAGGCCTG ACCCAGGCCG AGATTGCCGA GCGCATGGGG
TTGAGCAAGA ACATGGTCGA AAAGTATATG ATCCGCACGC TTCGGCACCT GCGTGAGCAC
CTGGATGTGT CGGCATGA
|
|---|
| Protein sequence | MTPTVSGHKG FLDHYHELIG TWTRKLRSRQ QAEDLTHDAF VRVLETPREQ VEQPRAYLHQ
AARNIAVDGF RREDRRQALE REAFEEGATG SGDPEAYVHA LELADSVERA LAELPLNCRQ
VFIWQKLEGL TQAEIAERMG LSKNMVEKYM IRTLRHLREH LDVSA
|
|---|
| |