| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0886 |
|---|
| Symbol | |
|---|
| ID | 5191417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1004803 |
|---|
| End bp | 1005945 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640585345 |
|---|
| Product | Pyrrolo-quinoline quinone |
|---|
| Protein accession | YP_001266232 |
|---|
| Protein GI | 148546130 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1520] FOG: WD40-like repeat |
|---|
| TIGRFAM ID | [TIGR03300] outer membrane assembly lipoprotein YfgL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.80102 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.395139 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCGGTT GGAAACATGC AGCAGTGCTG ACCCTGGCCG TACTGGCCGC AGGTTGCAGC
AGCAACAGCA AGAAGGAACT GCCCCCGGCC GAGCTGACCA AGTTCACCGA GGAAGTGGTG
CTGAAGAAGC AGTGGAGCCG TTCGATCGGT GACGGCCAAG GTGAAACCTA CAACACCCTG
GTACCGGCCA TCGAGAACGA CCGTATCTAC GCTTCCGACG TCAACGGCGA AGTCTTCGCC
CTCGACCGCA TCACGGGTGA CGTGGTGTGG AAGAAGGACC TGGAGCTGCA GGTTTCCGGT
GCAGTTGGCG TAGGCTATGG CCTGGTCATG CTCGGCACCC TCAAGGGTGA GGTCATTGCT
CTGGACTCCA GCACCGGTGA GGAGCGTTGG CGCTCGCGCG TGACCAGCGA AGTGCTGGCC
CCACCTGCCA ACAACGGTGA CGTGGTGGTG GTGCAGACCC AGGACGACCG CCTGATCGGC
CTGGATGCCG CCACTGGCGA CCGCCGTTGG ATCTACGAAA ACTCCCCGGC CGTGCTGACG
CTGCGTGGCA CCGGTGCGCC GATCGCCACC AACCGCCTGG CGGTTGCCGG CCTGTCCACC
GGCAAAGTGG TCGCGGTTGA CATCAACAAC GGTGTGCCGG TGTGGGAAAG CCGCGTGGCC
ATCCCGAAGG GCCGTTCCGA GCTGGACCGT GTGGTTGATA TCGACGGCGG CTTGCTGCTG
TCTGGTGGTA CCCTGTACGT CAGCACCTAC CAGGGCCGTG TAGCGGGCCT GGACCTGGAA
AGCGGCCGCG AGCTGTGGCA GCGCGATGCT TCCAGCTATG TGGGTGTCGC CCAGGGCTTC
GGTAACGTCT ACGTCAGCGA AGCTTCGGGT ACCGTGGAAG GTGTGGATGA GCGCTCTTCC
AGTGCCCTGT GGAGCAACGA CAGCATGGCT CGCCGCCAGT TGACCGCCCC TGAAGTGTTC
AGCAGCTACG TGGCTGTGGG TGACTTTGAA GGTTACCTGC ACCTGCTGAG CCAGGTGGAT
GGCCGCTTCG TCGGCCGTGA GCGTATCGAC AGCGATGGCC TGCGCGCCCG CCCACTTGTG
GTCGGCGACA CCATCTATGT CTTCGGCAAC AGCGGCAAGC TCGAGGCACT GACCATCCGC
TGA
|
|---|
| Protein sequence | MIGWKHAAVL TLAVLAAGCS SNSKKELPPA ELTKFTEEVV LKKQWSRSIG DGQGETYNTL
VPAIENDRIY ASDVNGEVFA LDRITGDVVW KKDLELQVSG AVGVGYGLVM LGTLKGEVIA
LDSSTGEERW RSRVTSEVLA PPANNGDVVV VQTQDDRLIG LDAATGDRRW IYENSPAVLT
LRGTGAPIAT NRLAVAGLST GKVVAVDINN GVPVWESRVA IPKGRSELDR VVDIDGGLLL
SGGTLYVSTY QGRVAGLDLE SGRELWQRDA SSYVGVAQGF GNVYVSEASG TVEGVDERSS
SALWSNDSMA RRQLTAPEVF SSYVAVGDFE GYLHLLSQVD GRFVGRERID SDGLRARPLV
VGDTIYVFGN SGKLEALTIR
|
|---|
| |