| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0881 |
|---|
| Symbol | |
|---|
| ID | 5191130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 999913 |
|---|
| End bp | 1000674 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640585340 |
|---|
| Product | type IV pilus biogenesis/stability protein PilW |
|---|
| Protein accession | YP_001266227 |
|---|
| Protein GI | 148546125 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.904873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.500681 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGC GCGCCGCGCT GTCGATCCTT GCGCTTTCGC TGCTGGCCGG CTGCGTGTCG
GGCGGCGCGA GCGACCCCTT GGCCAGCCGC CAGGGCAGGG TGGAGGCGGG GCGGGCTTAT
GTGCAGCTTG GCTTGGGTTA TTTGCAACAA GGTTTGACCG AACAGGCCAA GGCGCCGCTG
GGAAAGGCTC TGGCGCTGAA TGACCAGGAT GTCGATGCGC ACGCCGCCCT GGCAGTAGTG
TTTCAAGCCG AAGGCGAGCC GGCGCTGGCC GAAGCACACT TTCGCAAGGC CTTGCTGATA
AGCCGCGGTG ACACGCGAAT TCGCAACAAT TACGGCAGTT TCCTTTATGC TCAGGGGCGA
TTTGCCGAAG CCAAGCAGAT GTTTCGCCAG GCCAGTGCCG ATACCCTGTA TCCTGAGCGC
TCACGCGTGT ACGAAAATCT GGGCCTGACC GCCCTGAAGC TCGAACGCCG CGATCAGGCG
CACGCGTATT TGTTGAAAGC GTTACAACTC AACCCGCGGC AACCAAAAGC GTTGCTGGAA
ATGGCTGAGT TGTCCTACGA AAACAGGCAT TATGTGCCGG CCCGGGACTA CTACGATCGT
TTCAGCCAGT TGAGCGACCA CGACGCCCGT AGCCTGCTGC TGGGCAGCCG CCTTGCCAGG
GTGTTCGACG AGCAGGGCGC ACTGGCCGAA TTGGGCCAGC AATTACAACG ACTTTATCCC
GGTACGCCGG AATACCAGCA ATACCTGTCG GAGCAACGAT GA
|
|---|
| Protein sequence | MSLRAALSIL ALSLLAGCVS GGASDPLASR QGRVEAGRAY VQLGLGYLQQ GLTEQAKAPL
GKALALNDQD VDAHAALAVV FQAEGEPALA EAHFRKALLI SRGDTRIRNN YGSFLYAQGR
FAEAKQMFRQ ASADTLYPER SRVYENLGLT ALKLERRDQA HAYLLKALQL NPRQPKALLE
MAELSYENRH YVPARDYYDR FSQLSDHDAR SLLLGSRLAR VFDEQGALAE LGQQLQRLYP
GTPEYQQYLS EQR
|
|---|
| |