Gene Pput_0865 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0865 
SymbolsecD 
ID5192045 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp986373 
End bp988235 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content62% 
IMG OID640585324 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001266211 
Protein GI148546109 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0679979 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.748339 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAACA AATATCCTCT GTGGAAATAT GCACTGATCG TGCTGGTACT GGTGGTCGGT 
TTCATTTATT CCGCTCCCAA CCTCTACCCG GATGACCCGG CGGTACAGAT CAGCGGTGCC
AGCTCGGCGC TGCAGGTGAA TCAGGCCGAC CTTGATCGCG TCAGCAAGGC GCTGGTCGAT
GCCAAGATCG CCGTCAAGGG TGCAAGCCTG GGTGAAAAGG GCAGCGGGCT GATCCGCCTG
ACCAATCAGG AAGACCAGCT GCCAGCCAAG GATGTAGTGC GCAAGGCACT GGGCGATGAT
TACGTCGTGG CCCTGAACCT GGCCCAGACT ACCCCGCAAT GGCTGCGCAA CCTGGGCGCA
AGCCCGATGA AACTGGGCCT GGACCTGTCC GGTGGTGTGC ACTTCCTGCT GGAAGTGGAC
ATGGACAAGG CCATGACTGC CCGCATGAAA GTCTACGAAG GCGAGGTCAA GACCTTGCTG
CGCAAAGAGC GCGTCCGCTA CCGCAGCCTG CCTCAGCAGG ATGGCGGCAT CATGCTGGGC
TTCGCTGACG ATGCCACCCG CGAACAGGCA CGTGCCCTGA TCCGCAAGAA TTTCAATGAT
TTCGACCTGA CCACCACCGA TCGCAACGAG CTTGCGGTGC TGCGTCTGGC GCTGACCCAG
GCGAAAGTCG CCGAGATCCG CGAATACTCG ATCAAGCAGA ACCTCACCAC CGTGCGCAAC
CGCGTGAACG AGCTGGGTGT GGCAGAGCCT CTGGTACAGC GCCAGGGCGC CAACCGTATC
GTGGTCGAGC TGCCAGGCGT GCAGGACACC GCCGAAGCCA AGCGTATCCT TGGTAAAACG
GCCAACCTGG AGTTCCGCTT CGGTGCCGAA CCGGGTGCAT CCAAGGCCAC TACCGAGGTG
TTCGAGTTCC GTGAGGGCGG CCGCTCCGCC GCAGTCGAGC GGGGCCTGAT CATCACGGGT
GACCAGGTTA CCGACGCACA GGCCAGCTTC GACGAGCATG GCCGCCCGCA GGTGAACATT
CGCCTGGATG GCCACGGTGG CGAGCTGATG AGCCGTGCTA CCCGTAGCAA CGTCGGCCGT
AGCATGGCGG TGATCTTCAT CGAGCAGAAG CCGGTTACCC GCTACGTCAA GCAAACCGTC
GGCGGCGTCG AGAAGGACGT TGCCGTACAA AGCTTCGTCG AAGAGAAAAA AATCATCAGC
CTGGCGACCA TCCAGTCGCC GCTTGGCAGC CAGTTCCGCA TCACCGGTCT GAACGGCCAG
GGCGAATCGT CCGAGCTGGC CCTGCTGCTG CGTGCCGGTG GTCTGGCTGC GCCGATGTAC
TTCGCTGAAG AACGTACCAT TGGCCCAAGC CTGGGTGCTG ACAACATCAC CAAGGGTATC
GATGCGTCGC TGTGGGGCAT GCTGTTCGTC TCGCTGTTCA TCATCGCCAT CTACCGCGGC
TTCGGCGTGA TCGCCACCAT CGCCCTGGCG GGCAACATGG TCCTGCTGCT GGCGTTGATG
TCGCTGCTGG GCGCTACCCT GACGCTGCCG GGTATTGCCG GTATCGTGCT GACCATGGGT
ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGTATCC GCGAGGAGCT GAAAGCCGGC
ATGTCGGTGC AGCGTGCCAT CCACGAAGGC TTCAATCGTG CGTACACCGC GATCATCGAC
GCCAACCTGA CCAGCCTGCT GGTCGGCGGT ATCCTGTTCG CCATGGGTAC CGGCCCGGTC
AAAGGCTTTG CGGTTACCAT GTCCCTCGGG ATTTTCACCT CGATGTTCAC CGCCGTCATG
GTGACCCGCG CAATGGTCAA CCTGACCTGC GGCGGGCGTG ACATCAAGAA GCTGTGGGTT
TGA
 
Protein sequence
MLNKYPLWKY ALIVLVLVVG FIYSAPNLYP DDPAVQISGA SSALQVNQAD LDRVSKALVD 
AKIAVKGASL GEKGSGLIRL TNQEDQLPAK DVVRKALGDD YVVALNLAQT TPQWLRNLGA
SPMKLGLDLS GGVHFLLEVD MDKAMTARMK VYEGEVKTLL RKERVRYRSL PQQDGGIMLG
FADDATREQA RALIRKNFND FDLTTTDRNE LAVLRLALTQ AKVAEIREYS IKQNLTTVRN
RVNELGVAEP LVQRQGANRI VVELPGVQDT AEAKRILGKT ANLEFRFGAE PGASKATTEV
FEFREGGRSA AVERGLIITG DQVTDAQASF DEHGRPQVNI RLDGHGGELM SRATRSNVGR
SMAVIFIEQK PVTRYVKQTV GGVEKDVAVQ SFVEEKKIIS LATIQSPLGS QFRITGLNGQ
GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNITKGI DASLWGMLFV SLFIIAIYRG
FGVIATIALA GNMVLLLALM SLLGATLTLP GIAGIVLTMG MAVDANVLIF SRIREELKAG
MSVQRAIHEG FNRAYTAIID ANLTSLLVGG ILFAMGTGPV KGFAVTMSLG IFTSMFTAVM
VTRAMVNLTC GGRDIKKLWV