Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0865 |
Symbol | secD |
ID | 5192045 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 986373 |
End bp | 988235 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640585324 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001266211 |
Protein GI | 148546109 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0679979 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.748339 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAACA AATATCCTCT GTGGAAATAT GCACTGATCG TGCTGGTACT GGTGGTCGGT TTCATTTATT CCGCTCCCAA CCTCTACCCG GATGACCCGG CGGTACAGAT CAGCGGTGCC AGCTCGGCGC TGCAGGTGAA TCAGGCCGAC CTTGATCGCG TCAGCAAGGC GCTGGTCGAT GCCAAGATCG CCGTCAAGGG TGCAAGCCTG GGTGAAAAGG GCAGCGGGCT GATCCGCCTG ACCAATCAGG AAGACCAGCT GCCAGCCAAG GATGTAGTGC GCAAGGCACT GGGCGATGAT TACGTCGTGG CCCTGAACCT GGCCCAGACT ACCCCGCAAT GGCTGCGCAA CCTGGGCGCA AGCCCGATGA AACTGGGCCT GGACCTGTCC GGTGGTGTGC ACTTCCTGCT GGAAGTGGAC ATGGACAAGG CCATGACTGC CCGCATGAAA GTCTACGAAG GCGAGGTCAA GACCTTGCTG CGCAAAGAGC GCGTCCGCTA CCGCAGCCTG CCTCAGCAGG ATGGCGGCAT CATGCTGGGC TTCGCTGACG ATGCCACCCG CGAACAGGCA CGTGCCCTGA TCCGCAAGAA TTTCAATGAT TTCGACCTGA CCACCACCGA TCGCAACGAG CTTGCGGTGC TGCGTCTGGC GCTGACCCAG GCGAAAGTCG CCGAGATCCG CGAATACTCG ATCAAGCAGA ACCTCACCAC CGTGCGCAAC CGCGTGAACG AGCTGGGTGT GGCAGAGCCT CTGGTACAGC GCCAGGGCGC CAACCGTATC GTGGTCGAGC TGCCAGGCGT GCAGGACACC GCCGAAGCCA AGCGTATCCT TGGTAAAACG GCCAACCTGG AGTTCCGCTT CGGTGCCGAA CCGGGTGCAT CCAAGGCCAC TACCGAGGTG TTCGAGTTCC GTGAGGGCGG CCGCTCCGCC GCAGTCGAGC GGGGCCTGAT CATCACGGGT GACCAGGTTA CCGACGCACA GGCCAGCTTC GACGAGCATG GCCGCCCGCA GGTGAACATT CGCCTGGATG GCCACGGTGG CGAGCTGATG AGCCGTGCTA CCCGTAGCAA CGTCGGCCGT AGCATGGCGG TGATCTTCAT CGAGCAGAAG CCGGTTACCC GCTACGTCAA GCAAACCGTC GGCGGCGTCG AGAAGGACGT TGCCGTACAA AGCTTCGTCG AAGAGAAAAA AATCATCAGC CTGGCGACCA TCCAGTCGCC GCTTGGCAGC CAGTTCCGCA TCACCGGTCT GAACGGCCAG GGCGAATCGT CCGAGCTGGC CCTGCTGCTG CGTGCCGGTG GTCTGGCTGC GCCGATGTAC TTCGCTGAAG AACGTACCAT TGGCCCAAGC CTGGGTGCTG ACAACATCAC CAAGGGTATC GATGCGTCGC TGTGGGGCAT GCTGTTCGTC TCGCTGTTCA TCATCGCCAT CTACCGCGGC TTCGGCGTGA TCGCCACCAT CGCCCTGGCG GGCAACATGG TCCTGCTGCT GGCGTTGATG TCGCTGCTGG GCGCTACCCT GACGCTGCCG GGTATTGCCG GTATCGTGCT GACCATGGGT ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGTATCC GCGAGGAGCT GAAAGCCGGC ATGTCGGTGC AGCGTGCCAT CCACGAAGGC TTCAATCGTG CGTACACCGC GATCATCGAC GCCAACCTGA CCAGCCTGCT GGTCGGCGGT ATCCTGTTCG CCATGGGTAC CGGCCCGGTC AAAGGCTTTG CGGTTACCAT GTCCCTCGGG ATTTTCACCT CGATGTTCAC CGCCGTCATG GTGACCCGCG CAATGGTCAA CCTGACCTGC GGCGGGCGTG ACATCAAGAA GCTGTGGGTT TGA
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Protein sequence | MLNKYPLWKY ALIVLVLVVG FIYSAPNLYP DDPAVQISGA SSALQVNQAD LDRVSKALVD AKIAVKGASL GEKGSGLIRL TNQEDQLPAK DVVRKALGDD YVVALNLAQT TPQWLRNLGA SPMKLGLDLS GGVHFLLEVD MDKAMTARMK VYEGEVKTLL RKERVRYRSL PQQDGGIMLG FADDATREQA RALIRKNFND FDLTTTDRNE LAVLRLALTQ AKVAEIREYS IKQNLTTVRN RVNELGVAEP LVQRQGANRI VVELPGVQDT AEAKRILGKT ANLEFRFGAE PGASKATTEV FEFREGGRSA AVERGLIITG DQVTDAQASF DEHGRPQVNI RLDGHGGELM SRATRSNVGR SMAVIFIEQK PVTRYVKQTV GGVEKDVAVQ SFVEEKKIIS LATIQSPLGS QFRITGLNGQ GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNITKGI DASLWGMLFV SLFIIAIYRG FGVIATIALA GNMVLLLALM SLLGATLTLP GIAGIVLTMG MAVDANVLIF SRIREELKAG MSVQRAIHEG FNRAYTAIID ANLTSLLVGG ILFAMGTGPV KGFAVTMSLG IFTSMFTAVM VTRAMVNLTC GGRDIKKLWV
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