| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0829 |
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| Symbol | |
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| ID | 5192181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 927165 |
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| End bp | 928601 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640585288 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001266176 |
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| Protein GI | 148546074 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.461433 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCGAA GCAGTCCGCT GTCACCGCTG TTGCTGGGAG CCTTCGGGCT CCTGGCCCTG
AACTTCCACC CGGTTGCCCA GGCAGCCGAT GATATAGACC CCCACCTGCG CCAGATCGGG
CCGTCGCCGC TACGCGATGC GCCCGAAGCG GTGCCCGCCC GGCCCCCCAT CGGCATGGCC
CCGGTCGCCA GTGGCGAACG GCTGAGCCTT ACCGACGCGG TGCTGCAGGC AGCGCAATGG
CACCCGAGCA TCGCTGAGGC CATCGGCAAC CTTTACAAGC AGGGCGAAGG CATCAACGTC
GCCCGTGCGG GGTATTACCC ACAGATTTCC GGCGGTATCC GCACCGGTTA TGACACCGGC
TATGGCGGCG ACCGCAATAG CCAGGCCCTG AACCTGTCGC TCAAGCAAAT GCTCTATGAC
TTCGGCAAGG TCGACAGCGC CGTCAACGCG GCCCAGGCTG CCGCCGCCCG GGCCCAGGCC
AATATCCTGC TGGTGGTCGA CGACCTGGCC CGCGACACAG CCTATGCCTG GATCGAAACC
CGCCGCTACG AGCAACTGAT GACGATTGCC CGCGACCAGA TTCGCGGCGT GGGCGACATT
GCCGGCATGG CGCGCCAGCG CAGCGACATG GGCGCCAGCA CCCGGTCCGA CGTGGTGCAG
GCCGAGTCCC GGGTGGAAAG CGCCCGTGCC ACCCTGGAAG AGTACCAGTC GCAGTACGAG
CGCTGGCGCT CGACCCTGGC GGCGCTGATG GGCCGCGTTA CCCCACCGGC ACTGGCCGAA
GGCTCACCCG CCGAGCTGAA CCAGGCCTGC AAGCGCCCTG CACAGGGTGA TGACCGCCTG
CCTGCCGTGC TGATGGCCCT GGCCCAGCGC GCACAGGGCC AGGCCGAGCT GGCCCAGGCC
AAGGCGGAGG CCTACCCTAC CCTGTCGTTG CAACCGCAGG TCAATCATTA CCTGGACGAC
GACTACAACC GCGATAACGC ACGGCTGGAC CGCACCCAGG CGGGCATCTA CCTGAACGTC
GAAGTTCCCA TCTACCAAGG GGGCTCCATC AGCGCTCGCA CCCGCGCTGC CGGCCACGCG
CTGACCGCCG CCGATTCCGC CGAAGACGCC GCACGCCTGC AGGCGCGTCG GGGCCTGGCC
GAGGCCAAGG CGCAAACCTC CGGGCTGGGC CGCAGGCTGA CCTCACTGGA GGCCCGCCAG
GTCAGCATTC AGGAGGCACG CATGCTCTAC GGGCGTCAGT ACCTGGACCT AGGCACACGG
CCACTGCTCG ATCTGCTCAA CGCCGAGCAG GAGATCTACC AGTCACGCTT CGAACTTGCC
GGCACCCGCT CCGATCTGCT GCGCCTGGAT GTCGACTGCC TGTACAACAC CGGCGCCCTG
CGCACGGCCT TTGGCCTTGA GGGGCGCAAC CTGCAAGGTG TGGAGATCCA GCCATGA
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| Protein sequence | MKRSSPLSPL LLGAFGLLAL NFHPVAQAAD DIDPHLRQIG PSPLRDAPEA VPARPPIGMA
PVASGERLSL TDAVLQAAQW HPSIAEAIGN LYKQGEGINV ARAGYYPQIS GGIRTGYDTG
YGGDRNSQAL NLSLKQMLYD FGKVDSAVNA AQAAAARAQA NILLVVDDLA RDTAYAWIET
RRYEQLMTIA RDQIRGVGDI AGMARQRSDM GASTRSDVVQ AESRVESARA TLEEYQSQYE
RWRSTLAALM GRVTPPALAE GSPAELNQAC KRPAQGDDRL PAVLMALAQR AQGQAELAQA
KAEAYPTLSL QPQVNHYLDD DYNRDNARLD RTQAGIYLNV EVPIYQGGSI SARTRAAGHA
LTAADSAEDA ARLQARRGLA EAKAQTSGLG RRLTSLEARQ VSIQEARMLY GRQYLDLGTR
PLLDLLNAEQ EIYQSRFELA GTRSDLLRLD VDCLYNTGAL RTAFGLEGRN LQGVEIQP
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