| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0828 |
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| Symbol | |
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| ID | 5192180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 925000 |
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| End bp | 927168 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640585287 |
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| Product | ABC transporter related |
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| Protein accession | YP_001266175 |
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| Protein GI | 148546073 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.38784 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATT CGATCGATGT GACCCTGCCC AACCAGGCGC CTGCGCCGGA GCAGGCCGCC
GCCCACCGGC CAGACCTGGG CCCCTGGCTT GAGGTGATGT TGCAGGTGGC ACACCACTAC
CGCCTGGACG TATCACCCCA GCGTATTCGC CTGGCCGCTG CGGAGGATGC CCGCCCGTTG
AATGAAATCC TCCGCCACAT GGCACGTCAG GCGGGGCTGG CATTGCGCTT CGTGCACTTC
GATGCCAAGG GCCTGCGGCA ATGGCGCACG CCGCTGGTGC TGGAGCTGGA CGATGGGCAG
CTGGCGGTGG TCGAGTCGGT GACCGAAGAG GACGACCTGG CAGTGGTGTT CGCCGGTGAC
CAGGGCCTGA CTTCGCGTCT GCCCCGCGAC ACCCTGAAAG GCCGTATCAA CCGCGTGGCC
CTGCTGCGCC CGGCCCGGCC ACTGCGCGAT GTGCGCACCG ACGACTACAC CGCGCCTTAC
GACCGCCACT GGTTCGCCCG CATCGTACTG CGCGACCTGC GTCCCTATGG GCAGGTGATG
GTCGCTTCAC TGGTGGCCAA CGTGCTGGCG CTGGCCGGCG TGCTGTTCTC GATGCAGGTG
TACGACCGAG TGATACCGGC TGAATCCCTG CCCACCCTCT ACGTCCTGTT TGGCGGTGTG
GTGTTGGCAC TGGTGTTCGA CTTCAGCATG CGCCTGCTGC GGCTAAAGGT GACCGATCTG
CTTGGCAAGC GCGCCGACCT GCGGGTGAGC GACCTGGTCT ACGGCCATGC CCTGCGCCTG
CGCAACTCGG TGCGGCCGAA GTCCACCGGC TCGTTCATCT CGCAGTTGCG CGAGCTGGAG
TCGATCCGCG ACCTGATCAC GTCCAGCACC GCCACGGTGC TGGCCGACCT GCCGTTCTTC
CTGCTGTTCC TGTTCGTGTT CTGGCTGATC GGCGGCGTAC TGGTGTTCAT CCCGCTGGTC
GCGCTGCTGG CCATGGTGTT GCCCGGGTTG CTTGCACAAC GGCGCCTGGC ACGGTTGGCC
AATGCCTCGA TGCGTGAGTC GGCGCTGCGC AACGCCATGC TGGTGGAAAG TATCCAAGGC
CTGGACGAGA TCAAGGCACT GCAGGCGGAG GCACGCTTCG AACGGCAGTG GAACCAGTAC
AACGCGGCCT GCGCGCACAC CAACCTGCGC CTGCGCACCC TCACCAACGG CCTGGTGACC
TGGACGCAGA ACGTGCAGGG TGCCGTGTTT GCCGTGGTCA TCGTGATCGG CGCACCCATG
GTCATCGCCG GCGACCTCAC CACGGGTAGC CTGGTGGCGG CATCCATGCT TTCGTCGCGG
ATGATGGCAC CGCTCGCCCA GCTGACCCAT GTGCTGACCC GCTGGCAGCA GGCCAAGGTA
GCGCTGCAAG GCCTGGACAA GCTGATGCAG TCGCCAGTCG ACCACCCCGA AGGCGAAGCC
CGCGTGCACC TGCCAGCCAT TCACGGCGAG TACCGCCTGC GCCAGGCCAA CTTCCGCTAC
AGCGAAGACT ACCCGCCAGT GCTGAACATT GGCCGGCTGG ACATCCAGCC GGGCGAGCGC
ATTGCCGTGC TGGGCCGCAA CGGCGCCGGC AAATCAACCT TGCTGCAGGC GCTGGGTGGG
GCCATGGACC TGGTACAGGG CGAGATCAGC CTGGACGGTA TCGCCATGGC CCACCTCGAC
CCTGCTGACC TGCGCCGTGA CGTCGGCCTG CTGCCGCAGT ACGCGAGGCT GTTCCACGGC
ACCCTGCGGG AAAACCTCAC CCTCGGCGCC GGCCAGGCCA GCGACCAGGA ACTGGTGGCC
GCGCTGGCCG CCACTGGCGC ACTGGACTTC GTCCGCCGCC TGCCCAAGGG CATGGACCAC
TTGATCCTCG AAGGAGGCCT GGGCTTGTCT GGCGGCCAGC GCCAAGCCCT GGTGCTGTCG
CGCCTGCTGG TACGCCAGCC GCAGGTGCTG CTGCTGGACG AGCCGACCGC GTCGCTGGAC
GACATGACCG AGCGCAAGCT GCTGGATAAC CTGGAGCGCT TCTGTCAGGG CCGTACACTT
GTGATCGCAA CCCATCGACT GAGTGTTCTG CAGCGGGTCG ACCGCATCCT GGTGCTGGAC
GCCGGGCGCA TCGTCATCGA TGACGCGCGC GATGCCGCGC TGGCCAAACT GCAGGGAGCC
CAGGCATGA
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| Protein sequence | MSDSIDVTLP NQAPAPEQAA AHRPDLGPWL EVMLQVAHHY RLDVSPQRIR LAAAEDARPL
NEILRHMARQ AGLALRFVHF DAKGLRQWRT PLVLELDDGQ LAVVESVTEE DDLAVVFAGD
QGLTSRLPRD TLKGRINRVA LLRPARPLRD VRTDDYTAPY DRHWFARIVL RDLRPYGQVM
VASLVANVLA LAGVLFSMQV YDRVIPAESL PTLYVLFGGV VLALVFDFSM RLLRLKVTDL
LGKRADLRVS DLVYGHALRL RNSVRPKSTG SFISQLRELE SIRDLITSST ATVLADLPFF
LLFLFVFWLI GGVLVFIPLV ALLAMVLPGL LAQRRLARLA NASMRESALR NAMLVESIQG
LDEIKALQAE ARFERQWNQY NAACAHTNLR LRTLTNGLVT WTQNVQGAVF AVVIVIGAPM
VIAGDLTTGS LVAASMLSSR MMAPLAQLTH VLTRWQQAKV ALQGLDKLMQ SPVDHPEGEA
RVHLPAIHGE YRLRQANFRY SEDYPPVLNI GRLDIQPGER IAVLGRNGAG KSTLLQALGG
AMDLVQGEIS LDGIAMAHLD PADLRRDVGL LPQYARLFHG TLRENLTLGA GQASDQELVA
ALAATGALDF VRRLPKGMDH LILEGGLGLS GGQRQALVLS RLLVRQPQVL LLDEPTASLD
DMTERKLLDN LERFCQGRTL VIATHRLSVL QRVDRILVLD AGRIVIDDAR DAALAKLQGA
QA
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