| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0759 |
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| Symbol | |
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| ID | 5193164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 850282 |
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| End bp | 852003 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640585219 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001266107 |
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| Protein GI | 148546005 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR02996] repeat-companion domain TIGR02996 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.449417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC CATACGCATT GCTGCTTGCC TTCGCCCTGC TCCAGGGCTG CCAGAGCCTG
GCCCCGCAAA AGGCCGAGCC TCCCGTCGCC GAAGCTGGCA AGGCAGAGGC GGAAAAGCCC
GTGGTGTATG GTTCGTTCAA GCAGGACACA CTCTATAGCC TGTTGGTGGC AGAGCTGGCC
GGCCAGCGCA ACCGTTTCGA CATCGCCCTG GCCAACTACA CCGATCAGGC GGCAAAAACC
CAGGACCCAG CAGTTTCCGA GCGCGCCTAC CGCATTGCCG AGTACCTCGG CGCCGACGAG
CCGTCACTGG AGAATGCACT GGTCTGGGCG CGCAACGACC CGCAGAACCT CGACGCCCAG
CGCGCCGCCG CCATCCAGCT GGCCCGCGCC GGCCGCTATG ACGAGTCCAT GGCCTACATG
GAAAAGGTAC TGCAGGGCCA GGGCGACACC CACTTCGACT TCCTCGCCCT GTCCGCAGCC
GAAACCGATC AGAGCACCCG CGACGGCCTG CTACACAGTT TCGAACGCCT GCTGGTGAAA
TACCCCGACA ACGGCCAGCT GATATTCGGC AAGGCCCTGC TGCTGAACCA GGACGGCAAG
ACCGAAGAAG CCCTGGAACT GCTTGAGTCG CACCCGGCAC AAAACGGCGA AGTCGCCCCG
ATCCTGCTGC GCGCCCGTCT GCTGCAGGCC CTGGACCGTG GTCCAGAGGC CCTGCCACTG
CTGCGCGGGG CGATTCGCGA CAACCCAGAC GACAAACGCC TGCGCCTCAC CTACGCTCGC
ACCCTGGTCG AACAGGACCG TATTGCCGAT GCCAAAGGCG AGTTCATCAG TCTGGTCCAG
CAATACCCCG ATGATGACGA ATTGCGCTAC TCGCTGGCGC TGGTGTGCCT GGAGAACAAA
GACTGGGATG AAGCCGAAGG CTACTTGCAG GAGCTGATCG AGCGCGACAG CTACGTTGAC
GCCGCGCACC TGAACCTGGG CCGCATCCAC GAGGAGCGCC ACGACCCTGC TGGCGCTCTG
GATGAATACG CCCTGGTCGG CCCAGGCCCA GACTACCTGC CGGCACAGCT GCGCCAGGCC
GACATCCTGA TCGCCAACGG CCGCGGCAGC GATGCCTCGC GCCTGCTCGC CGAAGCGCGC
GAAGCCCAGC CAGACTACGC CATCCAGCTA TTCCTGATCG AATCGGAAAG CTACAGCAAC
AACAACAAGG ACGCCCAGGC CAATCAGGTG CTGCAGCAAG CCATCCAGCG CTACCCGGAC
GACCTCAACC TGCTTTACAC CCGCGCCATG CTGGCCGAGA AGCGCAACGA TTTGACGCAG
ATGGAAAAAG ACCTGCGCGC CATCATCGCC CGCGAGCCAG AAAACGCCAT GGCCCTGAAC
GCCCTGGGCT ACACCCTGGC CGACCGCACC ACCCGCTATG CCGAAGCCAA GGCGCTGATC
GACAAGGCCC ACCAATTGAC CCCCGATGAC CCGGCAGTGC TCGACAGCCT GGGTTGGGTC
AACTATCGCC TGGGCAACCT CGACGTCGCT GAAACCTACC TGCGCCAGGC CTTTGCCAAC
TTCCCCGACC ACGAAGTGGC CGCCCACCTG GGCGAAGTAC TGTGGGCCAA CGGCAAGCGC
CGCGAAGCTC GCCATGTATG GGCCAAGGGC TTCGAGGCCC AGGCCGACAG CCCTATCCTG
CGCAAGACCC TTTTGCGCCT GACCGGATCC GAGACTCTTT AA
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| Protein sequence | MNKPYALLLA FALLQGCQSL APQKAEPPVA EAGKAEAEKP VVYGSFKQDT LYSLLVAELA
GQRNRFDIAL ANYTDQAAKT QDPAVSERAY RIAEYLGADE PSLENALVWA RNDPQNLDAQ
RAAAIQLARA GRYDESMAYM EKVLQGQGDT HFDFLALSAA ETDQSTRDGL LHSFERLLVK
YPDNGQLIFG KALLLNQDGK TEEALELLES HPAQNGEVAP ILLRARLLQA LDRGPEALPL
LRGAIRDNPD DKRLRLTYAR TLVEQDRIAD AKGEFISLVQ QYPDDDELRY SLALVCLENK
DWDEAEGYLQ ELIERDSYVD AAHLNLGRIH EERHDPAGAL DEYALVGPGP DYLPAQLRQA
DILIANGRGS DASRLLAEAR EAQPDYAIQL FLIESESYSN NNKDAQANQV LQQAIQRYPD
DLNLLYTRAM LAEKRNDLTQ MEKDLRAIIA REPENAMALN ALGYTLADRT TRYAEAKALI
DKAHQLTPDD PAVLDSLGWV NYRLGNLDVA ETYLRQAFAN FPDHEVAAHL GEVLWANGKR
REARHVWAKG FEAQADSPIL RKTLLRLTGS ETL
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