| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0735 |
|---|
| Symbol | |
|---|
| ID | 5193604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 823314 |
|---|
| End bp | 824471 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640585194 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001266083 |
|---|
| Protein GI | 148545981 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.762648 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGC GTTTATTGGC GGGCTTGTTG TTCGCCGTTT CTGTCGTGGG TTTCAGTTTG
GGGGCCAGCT TGCCGCTGGT GTCGTTGCGC CTGCATGAAG CGGGGGCGAG CACCCTGGAA
ATCGGCATCA TCTCGGCCAT CCCTGCCGCC GGCATGATGC TCTCTGCTTT TCTGGTCGAC
GTCTGCTGCC GCCATCTCAC CCGGCGCACT ATCTATCTGC TGTGTTTCAG CCTGTGCACG
GTCAGCATCG CCTTGCTCGA GTCCGCGTTC GGCTCGTTGT GGCTGCTGGC GTTGCTGCGC
CTGGGCCTGG GGCTTGGCAT GGGGATCGCC ATCATCCTCG GCGAGTCGTG GGTGAAAGAA
CTGTGCCCCG AACATAACCG CGGCAAGATC ATGGCCCTGT ACGCCACCAG CTTTACGGGC
TTTCAGGTGC TGGGCCCGGC CATGCTGGCA GTGTTGGGCG CCGATAGCCC GTGGATCACG
GGTGTCGTCA CGGTCTGTTA TGGGCTGGCG TTGCTGTGCA TTGTGCTGAC GGTGCCCAAC
GACCATGTCG AGCACGAAGA GGGCGAAAAA AGCTTCGGCC TGGCCGGGTT CTTCCGTGTG
GCACCGGCGT TGTGCATGGC GGTGCTGTTC TTCTCGTTCT TCGATGCCGT GGTGCTGTCG
CTGCTGCCGG TGTACGCCAC CAGCCATGGC TTTGCCGTTG GCGTGGCGGC GTTGATGGTG
ACGGTGGTGT TTGCCGGCGA CATGCTGTTC CAGCTACCGC TGGGCTGGTT GGCCGACCGG
GTCGAGCGCA CAGGGCTGCA CCTGGCGTGC GGGCTGGTGG CGATGGTGAT CGGCATCGGT
TTGCCTTGGC TGCTGAATCT GACCTGGCTG CTGTGGCCGC TGCTGGTGGT GCTGGGCGCG
GTGGCGGGGG GGATCTATAC CTTGGCGCTG GTGTTGATCG GGCAGCGCTT CAAGGGCCAG
GACCTGGTCA CTGCCAACGC CAGTGTGGGC TTGCTCTGGG GCGTAGGCAG CCTGGTCGGG
CCGCTGGTCA GTGGGGCGGC CATGAATGTC GCGCCCCACG GTTTGCCCAT GGCGCTGGCC
CTGATGGCCG GGCTGTTCGT GTGCTTTGCC AGGCAGTCAT ACCGGCGCCG TGGGCGGATG
CGGGCTGTGG CGCAGTGA
|
|---|
| Protein sequence | MNMRLLAGLL FAVSVVGFSL GASLPLVSLR LHEAGASTLE IGIISAIPAA GMMLSAFLVD
VCCRHLTRRT IYLLCFSLCT VSIALLESAF GSLWLLALLR LGLGLGMGIA IILGESWVKE
LCPEHNRGKI MALYATSFTG FQVLGPAMLA VLGADSPWIT GVVTVCYGLA LLCIVLTVPN
DHVEHEEGEK SFGLAGFFRV APALCMAVLF FSFFDAVVLS LLPVYATSHG FAVGVAALMV
TVVFAGDMLF QLPLGWLADR VERTGLHLAC GLVAMVIGIG LPWLLNLTWL LWPLLVVLGA
VAGGIYTLAL VLIGQRFKGQ DLVTANASVG LLWGVGSLVG PLVSGAAMNV APHGLPMALA
LMAGLFVCFA RQSYRRRGRM RAVAQ
|
|---|
| |