Gene Pput_0703 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0703 
Symbol 
ID5190462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp788590 
End bp792420 
Gene Length3831 bp 
Protein Length1276 aa 
Translation table11 
GC content64% 
IMG OID640585161 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001266051 
Protein GI148545949 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.26462 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0640291 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCAACC TTACTCATCC GTCGTCATTG CGTTCCGCCC CACAAGCACC CGCAACTCTC 
CTGCGCGGGT CGATCAAGGG TGCGCTGGCG CTGCTGGCCC TGATCCTGCT GGGCCTGCTG
CTGTGGCAGC TGTTCGCCCA GTTCAATCAT ACCCAGGCCG AATTGCGCAA ACAGAGCCTG
GACGCCTCCG CGGAACTGGC CGACCACCTG AGCCTGAACA TGGCGCTCAA GGCGCAACAG
GCCGTAAACA TGGTGCAACC CTACCTTGAT GCACCAACAC CTGCCGCCCT GCCCAGCCTG
CTCGGTACCC TGCGCGAGCG CCTCCCCGCC TTGCAGAGCG TGGCCTGGCT GAACAACACC
GGGCAGCTAC GCGCCGACAG CCTGGCCGGC AGCCCCGACC GCCAGTCGCT TGACGAGTTG
CTCGTGCTGA GCCAGGGACG CCCGTACTTC TTCACCAATT CGGCCGACAA CCACCTCCTG
TACCTGTTGC TGCGCCAGGA TGCCTCACAG GGTAGCGGCT ACTGGCTACT GCGCCTGTCA
CCGGACTATT ACCGCGAGCT TACTCTCCAC CTCGAGGGCA GTGGCCACCC GCAGTGGCTG
CTGGAAAACA GCCGCAGCGG CGAGGTGCTG CAGCGCCATG CCGCAGCCGA CACCAGCGAC
GAGCCGCTGC AAAGCGTGAT GCTGGCCTTC ATCGAAAACA GCACCTGGCA GCTACGCGGT
CTGTTCGACG CCAAACTGGC CCGACAAAAA TTATTGCCGG CGCTGTTCGG CAAGTGCCTG
CTGGTGCTGT TCTGCGCCCT GCTGCCGGTG CTGGCGCTAA TCAACATGCG TCGCCGCCAG
CGGGCGCTGC AGGAAGACCG TCGGCGTTAT CAGGAAATTT TTGAAGGCAC CGGCGTTGCC
CTGTGCGTGC TCGACCTGTC CAGCCTGCCC GGCCAGCTCG ATCGCTACCA CCTGCGTAAC
CGGGCCGCAC TCAAGCACAG CCTGGCACTG GACCCGAACC TGCGCCGCTC GCTGCTGCTG
GAGCTGAAGA TCACCGAGGT CAACCAAGTG GCGCGCCAGC TGCTGAACAT CGACTGCCAC
GAAGGTGCCT GGCAGCGGCT GATCAATGGC ACTGGCGACA GCCGAGACAG CGTCGGCATG
CAACTGATCG ACGCACTGAT CGAACAACGC CCGCTGCTGG AGCTGGAAGT GCGCTTGCCG
ACACCGCAAG GCGACGAGCT GCACCTGTGG CTGATGGCTC GCATGCCGCT GCAGCGTCGT
GATTATCAGG CGGTTATCCT CAGCATCAGC GATATCACCA GCCGCAAACA GGTGGAGCTG
TCGCTACTGG AGCGCGAAAG CTTCTGGTCG GACGTGGTAC GCACCGTACC CGACCAGTTG
TATGTGCAGG ATGTGCCCAG CCAACGGATG ATCTTCAGCA ACCGCCACCT CGGCCAGACC
CTGGGCTACG ACCGCACCGA GCTGGCACAG ATGGGCGACC GCTTCTGGGA GCTGCTGCTG
CACCCCGAGG ACGCCGCACA CTACCAGGCA CTGCGCCAGC AACAGCGCGA CAGCGGTCAT
GACCAACCGC TGCACTGCCA GCTGCGCTTC CGCCACCGCG ACGGAAGCTG GCGCTGCTAC
GACATCCGCG AGCAAGTGCT GACCCGCAAC GCCGAAGGCC TGGTGACGCG CATCATCGGT
GTGGGCAAGG ATGTGACCGT TCAGATCGAG GCCAGCCAGT CGCTACGTGA CAGCGAGCAA
CGCTACCGCA TGCTCGCCGA AAGCATCAGT GACGTGATCT TTTCCACCGA CAACCAGCTC
AAGCTCAACT ATGTCAGCCC CTCGGTACAG AGCGTGCTGG GCTACCAGGC CGACTGGATC
TTCGCCAACG GCTGGCAGTC GATCGTCGCC AACCCGGCCC AGCTCACCGG CATCTACAGC
CTGATGGAGC GTGTCAGCAA GGCCATGGGC GATCCGGCGC AGATGGCGCA ACTGTGCAGC
CAGTTACCCA CCCAACTGTT CCTGTTCGAC TGCCTGCGTG CCGATGGCCG CAAGATCCCG
ATCGAGCTGC GCCTGGTGCT GGTGTGGGAC GATGACCAGC GCTTCGAAGG CGTACTCGGG
GTGGGCCGCG ACATCAGCCA GCAACGTCGT GCCGAAAAAG ACCTGCGCAT GGCCGCGACC
GTATTCGAAC ACTCCACCTC GGCGATCCTC ATCACCGACC CCGCCGGCTA TATCGTCCAG
GCCAACGAGG CGTTCAGCCG CGTCAGCGGT TACGCCGTCA GTGAAGTGCT CGACCAATTG
CCGGGCATGC TCACTGTCGA CGAACAGCAG GAAGGCCATC TGCGCTATGT GGTCAAGCAA
CTGCACCAGC GCGGCAGCTG GGAAGGTGAA GTGTGGCTCA AGCGCCGTGA CGGCGACCAT
TACCCGGCCT GGGTCGGCAT CACTGCGGTA CTGGACGACG AAGGCGACCT GGCCAGCTAC
GTGTGCTTCT TCACCGACAT CAGCGAACGC AAGGCCAGCG AACAGCGCAT CCACCGCCTG
GCCTACTACG ACGCCCTTAC CCACCTGCCC AACCGCACAC TGTTCCAGGA CCGTTTGTAC
AATGCCCTGC AGCAGGCCGA GCGGCAGAAG GCCTGGGTGG TGCTGATGTT CCTCGACCTC
GACCGCTTCA AACCGATCAA CGACTCCCTC GGCCATGCGG CCGGCGACCG CATGCTCAAG
GACATGGCCC TGCGCCTGCT GGCCTGCGTG GATGACGACG ACACGGTGGC ACGCATGGGC
GGCGACGAGT TCACCCTGCT GCTGCAGCCG CGCCCCACCC GCGAAATGGC CCTGAACCGC
GCCATCCACG TGGCCGAGAA CATCCTCGGC AGCCTGGTGC GGCCGTTCGT GCTGGAAAAC
CGCGAGTTCT TCGTCACCGC CAGCATCGGC ATCGCCCTCA GTCCGCAGGA TGGCAGTGAG
CTGAGCCAAC TGATGAAGAA CGCCGACACC GCCATGTACC ACGCCAAGGA GCGCGGCAAG
AACAACTTCC AATTCTACCA GGCCGAAATG AACGCCAGCG CCCTGGAGCG CCTGGAGCTG
GAAAGCGACC TGCGCCATGC CATGGAGCAG AACGAGTTCA TCCTCTACTA CCAGCCGCAG
TTCAGCGGCG ACGGCAAGCG CCTGACGGGC GCCGAAGCGC TGCTGCGCTG GCGTCACCCG
ACCCGTGGCC TGGTGCCGCC GGGTGACTTC ATCCCGGTGA TCGAAGAACT GGGCCTGGTG
GTGGACGTGG GCGACTGGGT GCTGCGCGAG GCCAGCCGCC AGCTCAAGGC CTGGCACAAG
GCCAAGGTGC GGGTGCCGAA AGTGTCGGTG AATATTTCGG CGCGGCAGTT CTCCGACGGC
CAGCTGGGCA CGCGGATTGC CAACATTCTG GAAGAAAGCG GCCTGCCGCC GGCATGCCTG
GAACTGGAGT TGACCGAAAG TATCCTGATG CGTGAGGTGA ACGAGGCGCT GCAGATTCTT
GCCAGCCTGA AAAACCTCGG CCTGAGCATT GCGGTAGACG ACTTCGGCAC CGGCTACTCG
TCGCTCAACT ACCTCAAGCA GTTCCCCATC GACGTGCTGA AGATCGACCG TACCTTCGTC
GACGGCCTGC CCGAAGGCGA GCAGGACGCG CAGATTGCCC GGGCGATCAT CGCCATGGCC
CACAGCCTCA ACCTGGCAGT CATCGCCGAG GGCGTGGAAA CCCACGAACA GCTGGAGTTT
CTGCGCGAGC ATGGTTGCGA CGAGGTGCAG GGCTATCTGT TCGGGCGGCC GATGCCGGCG
CATCAGTTCG AGGCGCAATT CTCCAACGAG ACCTTGTTCA TGTTCCATTG A
 
Protein sequence
MTNLTHPSSL RSAPQAPATL LRGSIKGALA LLALILLGLL LWQLFAQFNH TQAELRKQSL 
DASAELADHL SLNMALKAQQ AVNMVQPYLD APTPAALPSL LGTLRERLPA LQSVAWLNNT
GQLRADSLAG SPDRQSLDEL LVLSQGRPYF FTNSADNHLL YLLLRQDASQ GSGYWLLRLS
PDYYRELTLH LEGSGHPQWL LENSRSGEVL QRHAAADTSD EPLQSVMLAF IENSTWQLRG
LFDAKLARQK LLPALFGKCL LVLFCALLPV LALINMRRRQ RALQEDRRRY QEIFEGTGVA
LCVLDLSSLP GQLDRYHLRN RAALKHSLAL DPNLRRSLLL ELKITEVNQV ARQLLNIDCH
EGAWQRLING TGDSRDSVGM QLIDALIEQR PLLELEVRLP TPQGDELHLW LMARMPLQRR
DYQAVILSIS DITSRKQVEL SLLERESFWS DVVRTVPDQL YVQDVPSQRM IFSNRHLGQT
LGYDRTELAQ MGDRFWELLL HPEDAAHYQA LRQQQRDSGH DQPLHCQLRF RHRDGSWRCY
DIREQVLTRN AEGLVTRIIG VGKDVTVQIE ASQSLRDSEQ RYRMLAESIS DVIFSTDNQL
KLNYVSPSVQ SVLGYQADWI FANGWQSIVA NPAQLTGIYS LMERVSKAMG DPAQMAQLCS
QLPTQLFLFD CLRADGRKIP IELRLVLVWD DDQRFEGVLG VGRDISQQRR AEKDLRMAAT
VFEHSTSAIL ITDPAGYIVQ ANEAFSRVSG YAVSEVLDQL PGMLTVDEQQ EGHLRYVVKQ
LHQRGSWEGE VWLKRRDGDH YPAWVGITAV LDDEGDLASY VCFFTDISER KASEQRIHRL
AYYDALTHLP NRTLFQDRLY NALQQAERQK AWVVLMFLDL DRFKPINDSL GHAAGDRMLK
DMALRLLACV DDDDTVARMG GDEFTLLLQP RPTREMALNR AIHVAENILG SLVRPFVLEN
REFFVTASIG IALSPQDGSE LSQLMKNADT AMYHAKERGK NNFQFYQAEM NASALERLEL
ESDLRHAMEQ NEFILYYQPQ FSGDGKRLTG AEALLRWRHP TRGLVPPGDF IPVIEELGLV
VDVGDWVLRE ASRQLKAWHK AKVRVPKVSV NISARQFSDG QLGTRIANIL EESGLPPACL
ELELTESILM REVNEALQIL ASLKNLGLSI AVDDFGTGYS SLNYLKQFPI DVLKIDRTFV
DGLPEGEQDA QIARAIIAMA HSLNLAVIAE GVETHEQLEF LREHGCDEVQ GYLFGRPMPA
HQFEAQFSNE TLFMFH