| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0703 |
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| Symbol | |
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| ID | 5190462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 788590 |
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| End bp | 792420 |
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| Gene Length | 3831 bp |
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| Protein Length | 1276 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640585161 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001266051 |
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| Protein GI | 148545949 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.26462 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0640291 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCAACC TTACTCATCC GTCGTCATTG CGTTCCGCCC CACAAGCACC CGCAACTCTC
CTGCGCGGGT CGATCAAGGG TGCGCTGGCG CTGCTGGCCC TGATCCTGCT GGGCCTGCTG
CTGTGGCAGC TGTTCGCCCA GTTCAATCAT ACCCAGGCCG AATTGCGCAA ACAGAGCCTG
GACGCCTCCG CGGAACTGGC CGACCACCTG AGCCTGAACA TGGCGCTCAA GGCGCAACAG
GCCGTAAACA TGGTGCAACC CTACCTTGAT GCACCAACAC CTGCCGCCCT GCCCAGCCTG
CTCGGTACCC TGCGCGAGCG CCTCCCCGCC TTGCAGAGCG TGGCCTGGCT GAACAACACC
GGGCAGCTAC GCGCCGACAG CCTGGCCGGC AGCCCCGACC GCCAGTCGCT TGACGAGTTG
CTCGTGCTGA GCCAGGGACG CCCGTACTTC TTCACCAATT CGGCCGACAA CCACCTCCTG
TACCTGTTGC TGCGCCAGGA TGCCTCACAG GGTAGCGGCT ACTGGCTACT GCGCCTGTCA
CCGGACTATT ACCGCGAGCT TACTCTCCAC CTCGAGGGCA GTGGCCACCC GCAGTGGCTG
CTGGAAAACA GCCGCAGCGG CGAGGTGCTG CAGCGCCATG CCGCAGCCGA CACCAGCGAC
GAGCCGCTGC AAAGCGTGAT GCTGGCCTTC ATCGAAAACA GCACCTGGCA GCTACGCGGT
CTGTTCGACG CCAAACTGGC CCGACAAAAA TTATTGCCGG CGCTGTTCGG CAAGTGCCTG
CTGGTGCTGT TCTGCGCCCT GCTGCCGGTG CTGGCGCTAA TCAACATGCG TCGCCGCCAG
CGGGCGCTGC AGGAAGACCG TCGGCGTTAT CAGGAAATTT TTGAAGGCAC CGGCGTTGCC
CTGTGCGTGC TCGACCTGTC CAGCCTGCCC GGCCAGCTCG ATCGCTACCA CCTGCGTAAC
CGGGCCGCAC TCAAGCACAG CCTGGCACTG GACCCGAACC TGCGCCGCTC GCTGCTGCTG
GAGCTGAAGA TCACCGAGGT CAACCAAGTG GCGCGCCAGC TGCTGAACAT CGACTGCCAC
GAAGGTGCCT GGCAGCGGCT GATCAATGGC ACTGGCGACA GCCGAGACAG CGTCGGCATG
CAACTGATCG ACGCACTGAT CGAACAACGC CCGCTGCTGG AGCTGGAAGT GCGCTTGCCG
ACACCGCAAG GCGACGAGCT GCACCTGTGG CTGATGGCTC GCATGCCGCT GCAGCGTCGT
GATTATCAGG CGGTTATCCT CAGCATCAGC GATATCACCA GCCGCAAACA GGTGGAGCTG
TCGCTACTGG AGCGCGAAAG CTTCTGGTCG GACGTGGTAC GCACCGTACC CGACCAGTTG
TATGTGCAGG ATGTGCCCAG CCAACGGATG ATCTTCAGCA ACCGCCACCT CGGCCAGACC
CTGGGCTACG ACCGCACCGA GCTGGCACAG ATGGGCGACC GCTTCTGGGA GCTGCTGCTG
CACCCCGAGG ACGCCGCACA CTACCAGGCA CTGCGCCAGC AACAGCGCGA CAGCGGTCAT
GACCAACCGC TGCACTGCCA GCTGCGCTTC CGCCACCGCG ACGGAAGCTG GCGCTGCTAC
GACATCCGCG AGCAAGTGCT GACCCGCAAC GCCGAAGGCC TGGTGACGCG CATCATCGGT
GTGGGCAAGG ATGTGACCGT TCAGATCGAG GCCAGCCAGT CGCTACGTGA CAGCGAGCAA
CGCTACCGCA TGCTCGCCGA AAGCATCAGT GACGTGATCT TTTCCACCGA CAACCAGCTC
AAGCTCAACT ATGTCAGCCC CTCGGTACAG AGCGTGCTGG GCTACCAGGC CGACTGGATC
TTCGCCAACG GCTGGCAGTC GATCGTCGCC AACCCGGCCC AGCTCACCGG CATCTACAGC
CTGATGGAGC GTGTCAGCAA GGCCATGGGC GATCCGGCGC AGATGGCGCA ACTGTGCAGC
CAGTTACCCA CCCAACTGTT CCTGTTCGAC TGCCTGCGTG CCGATGGCCG CAAGATCCCG
ATCGAGCTGC GCCTGGTGCT GGTGTGGGAC GATGACCAGC GCTTCGAAGG CGTACTCGGG
GTGGGCCGCG ACATCAGCCA GCAACGTCGT GCCGAAAAAG ACCTGCGCAT GGCCGCGACC
GTATTCGAAC ACTCCACCTC GGCGATCCTC ATCACCGACC CCGCCGGCTA TATCGTCCAG
GCCAACGAGG CGTTCAGCCG CGTCAGCGGT TACGCCGTCA GTGAAGTGCT CGACCAATTG
CCGGGCATGC TCACTGTCGA CGAACAGCAG GAAGGCCATC TGCGCTATGT GGTCAAGCAA
CTGCACCAGC GCGGCAGCTG GGAAGGTGAA GTGTGGCTCA AGCGCCGTGA CGGCGACCAT
TACCCGGCCT GGGTCGGCAT CACTGCGGTA CTGGACGACG AAGGCGACCT GGCCAGCTAC
GTGTGCTTCT TCACCGACAT CAGCGAACGC AAGGCCAGCG AACAGCGCAT CCACCGCCTG
GCCTACTACG ACGCCCTTAC CCACCTGCCC AACCGCACAC TGTTCCAGGA CCGTTTGTAC
AATGCCCTGC AGCAGGCCGA GCGGCAGAAG GCCTGGGTGG TGCTGATGTT CCTCGACCTC
GACCGCTTCA AACCGATCAA CGACTCCCTC GGCCATGCGG CCGGCGACCG CATGCTCAAG
GACATGGCCC TGCGCCTGCT GGCCTGCGTG GATGACGACG ACACGGTGGC ACGCATGGGC
GGCGACGAGT TCACCCTGCT GCTGCAGCCG CGCCCCACCC GCGAAATGGC CCTGAACCGC
GCCATCCACG TGGCCGAGAA CATCCTCGGC AGCCTGGTGC GGCCGTTCGT GCTGGAAAAC
CGCGAGTTCT TCGTCACCGC CAGCATCGGC ATCGCCCTCA GTCCGCAGGA TGGCAGTGAG
CTGAGCCAAC TGATGAAGAA CGCCGACACC GCCATGTACC ACGCCAAGGA GCGCGGCAAG
AACAACTTCC AATTCTACCA GGCCGAAATG AACGCCAGCG CCCTGGAGCG CCTGGAGCTG
GAAAGCGACC TGCGCCATGC CATGGAGCAG AACGAGTTCA TCCTCTACTA CCAGCCGCAG
TTCAGCGGCG ACGGCAAGCG CCTGACGGGC GCCGAAGCGC TGCTGCGCTG GCGTCACCCG
ACCCGTGGCC TGGTGCCGCC GGGTGACTTC ATCCCGGTGA TCGAAGAACT GGGCCTGGTG
GTGGACGTGG GCGACTGGGT GCTGCGCGAG GCCAGCCGCC AGCTCAAGGC CTGGCACAAG
GCCAAGGTGC GGGTGCCGAA AGTGTCGGTG AATATTTCGG CGCGGCAGTT CTCCGACGGC
CAGCTGGGCA CGCGGATTGC CAACATTCTG GAAGAAAGCG GCCTGCCGCC GGCATGCCTG
GAACTGGAGT TGACCGAAAG TATCCTGATG CGTGAGGTGA ACGAGGCGCT GCAGATTCTT
GCCAGCCTGA AAAACCTCGG CCTGAGCATT GCGGTAGACG ACTTCGGCAC CGGCTACTCG
TCGCTCAACT ACCTCAAGCA GTTCCCCATC GACGTGCTGA AGATCGACCG TACCTTCGTC
GACGGCCTGC CCGAAGGCGA GCAGGACGCG CAGATTGCCC GGGCGATCAT CGCCATGGCC
CACAGCCTCA ACCTGGCAGT CATCGCCGAG GGCGTGGAAA CCCACGAACA GCTGGAGTTT
CTGCGCGAGC ATGGTTGCGA CGAGGTGCAG GGCTATCTGT TCGGGCGGCC GATGCCGGCG
CATCAGTTCG AGGCGCAATT CTCCAACGAG ACCTTGTTCA TGTTCCATTG A
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| Protein sequence | MTNLTHPSSL RSAPQAPATL LRGSIKGALA LLALILLGLL LWQLFAQFNH TQAELRKQSL
DASAELADHL SLNMALKAQQ AVNMVQPYLD APTPAALPSL LGTLRERLPA LQSVAWLNNT
GQLRADSLAG SPDRQSLDEL LVLSQGRPYF FTNSADNHLL YLLLRQDASQ GSGYWLLRLS
PDYYRELTLH LEGSGHPQWL LENSRSGEVL QRHAAADTSD EPLQSVMLAF IENSTWQLRG
LFDAKLARQK LLPALFGKCL LVLFCALLPV LALINMRRRQ RALQEDRRRY QEIFEGTGVA
LCVLDLSSLP GQLDRYHLRN RAALKHSLAL DPNLRRSLLL ELKITEVNQV ARQLLNIDCH
EGAWQRLING TGDSRDSVGM QLIDALIEQR PLLELEVRLP TPQGDELHLW LMARMPLQRR
DYQAVILSIS DITSRKQVEL SLLERESFWS DVVRTVPDQL YVQDVPSQRM IFSNRHLGQT
LGYDRTELAQ MGDRFWELLL HPEDAAHYQA LRQQQRDSGH DQPLHCQLRF RHRDGSWRCY
DIREQVLTRN AEGLVTRIIG VGKDVTVQIE ASQSLRDSEQ RYRMLAESIS DVIFSTDNQL
KLNYVSPSVQ SVLGYQADWI FANGWQSIVA NPAQLTGIYS LMERVSKAMG DPAQMAQLCS
QLPTQLFLFD CLRADGRKIP IELRLVLVWD DDQRFEGVLG VGRDISQQRR AEKDLRMAAT
VFEHSTSAIL ITDPAGYIVQ ANEAFSRVSG YAVSEVLDQL PGMLTVDEQQ EGHLRYVVKQ
LHQRGSWEGE VWLKRRDGDH YPAWVGITAV LDDEGDLASY VCFFTDISER KASEQRIHRL
AYYDALTHLP NRTLFQDRLY NALQQAERQK AWVVLMFLDL DRFKPINDSL GHAAGDRMLK
DMALRLLACV DDDDTVARMG GDEFTLLLQP RPTREMALNR AIHVAENILG SLVRPFVLEN
REFFVTASIG IALSPQDGSE LSQLMKNADT AMYHAKERGK NNFQFYQAEM NASALERLEL
ESDLRHAMEQ NEFILYYQPQ FSGDGKRLTG AEALLRWRHP TRGLVPPGDF IPVIEELGLV
VDVGDWVLRE ASRQLKAWHK AKVRVPKVSV NISARQFSDG QLGTRIANIL EESGLPPACL
ELELTESILM REVNEALQIL ASLKNLGLSI AVDDFGTGYS SLNYLKQFPI DVLKIDRTFV
DGLPEGEQDA QIARAIIAMA HSLNLAVIAE GVETHEQLEF LREHGCDEVQ GYLFGRPMPA
HQFEAQFSNE TLFMFH
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