| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0702 |
|---|
| Symbol | glyA |
|---|
| ID | 5193074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 787031 |
|---|
| End bp | 788284 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640585160 |
|---|
| Product | serine hydroxymethyltransferase |
|---|
| Protein accession | YP_001266050 |
|---|
| Protein GI | 148545948 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0603318 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0336909 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCC GTGATTTGAC CATTGCCAAG TACGACGCCG AGCTCTTCGA AGCCATGCAG
CAAGAAGCTC TGCGCCAGGA AGAGCATATC GAGCTGATCG CTTCGGAAAA CTACACCAGC
CCGGCAGTCA TGGAAGCCCA GGGCTCGGTC CTGACCAACA AGTACGCCGA AGGCTACCCA
GGCAAGCGCT ACTACGGCGG TTGCGAGTAC GTCGACGTCG TCGAGCAACT GGCCATCGAC
CGTGCCAAGG AGCTGTTCGG CGCCGACTAC GCCAACGTAC AGCCGCACGC TGGCTCCCAG
GCCAACGCTG CCGTCTACCT GGCCCTGCTG TCTGCCGGTG ACACCATCCT GGGCATGAGC
CTGGCCCACG GTGGCCACCT GACCCACGGT GCTTCGGTAA GCTCCTCGGG CAAGCTGTAC
AACGCCATCC AGTACGGCAT CGACGGCAAT GGCCTGATCG ACTACGACGA AGTCGAGCGC
CTGGCTGTCG AGCACAAGCC CAAGATGATC GTTGCCGGCT TCTCGGCCTA CTCGCAGGTT
CTGGACTTCG CCCGCTTCCG CGCCATCGCC GACAAGGTCG GTGCCTACCT GTTCGTCGAC
ATGGCCCACG TTGCCGGCCT GGTTGCCGCT GGTGTGTACC CGAACCCTGT TCCGTTCGCC
GACGTGGTCA CCACCACCAC CCACAAGACC CTGCGCGGCC CGCGCGGTGG CCTGATCCTG
GCCCGTGCCA ACGCCGACAT CGAGAAGAAG CTGAACTCCG CCGTCTTCCC GGGCGCCCAG
GGCGGCCCGC TGGAGCACGT CATCGCGGCC AAGGCCATCT GCTTCAAGGA AGCCCTGCAG
CCAGAGTTCA AGGCTTACCA GCAGCAGGTC GTGAAGAACG CCCAGGCCAT GGCCAGCGTG
TTCATCGAGC GCGGTTTCGA CGTGGTTTCC GGTGGCACCC AGAACCACCT GTTCCTGCTG
TCGCTGATCA AGCAGGAAAT CTCCGGTAAG GATGCTGACG CCGCACTGGG CAAAGCTTTC
ATCACCGTCA ACAAGAACTC GGTACCGAAC GACCCGCGTT CGCCGTTCGT CACCTCGGGC
CTGCGTTTCG GCACCCCAGC CGTGACCACC CGTGGTTTCA AGGAAGCCGA GTGCAAGGAA
CTGGCCGGCT GGATCTGCGA CATCCTGGCC GACCTGAACA ACGAAGCGGT GATCGACGCC
GTCCGTGAGA AGGTCAAGGC CATCTGCAAG AAGCTGCCGG TTTACGGCAA CTGA
|
|---|
| Protein sequence | MFSRDLTIAK YDAELFEAMQ QEALRQEEHI ELIASENYTS PAVMEAQGSV LTNKYAEGYP
GKRYYGGCEY VDVVEQLAID RAKELFGADY ANVQPHAGSQ ANAAVYLALL SAGDTILGMS
LAHGGHLTHG ASVSSSGKLY NAIQYGIDGN GLIDYDEVER LAVEHKPKMI VAGFSAYSQV
LDFARFRAIA DKVGAYLFVD MAHVAGLVAA GVYPNPVPFA DVVTTTTHKT LRGPRGGLIL
ARANADIEKK LNSAVFPGAQ GGPLEHVIAA KAICFKEALQ PEFKAYQQQV VKNAQAMASV
FIERGFDVVS GGTQNHLFLL SLIKQEISGK DADAALGKAF ITVNKNSVPN DPRSPFVTSG
LRFGTPAVTT RGFKEAECKE LAGWICDILA DLNNEAVIDA VREKVKAICK KLPVYGN
|
|---|
| |