| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0687 |
|---|
| Symbol | |
|---|
| ID | 5195514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 772558 |
|---|
| End bp | 773487 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640585146 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_001266036 |
|---|
| Protein GI | 148545934 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01763] malate dehydrogenase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.663685 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0260965 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACAAAT TAACGATTGT GGGTGCCGGC CTGGTCGGCG AGGCGGCGGC GCAGATCATC
GCCCGGGATG AGTTGTGCCG TGAGCTGGTG TTGATGGACG TGCAGGGTGA ACTGGCGCAG
GGCAAGGCGC TGGACGTTTG GCAGGCGGCT GTGGATTCAG GTTCCGATAC CCATGTTCAC
GGCGGAGCCA AAGCCGAGAT GCTGGAGGGG TCCGAGCTGG TGGTGATCAC GGCGGGCGTG
CCGCGCAAGC CCGGCCAGTC GCGCCAGGAT GTATTGAGTA CCAACCTGCC AATCCTCGAC
AGCATCATGG CGGATATCAA GCACCACGCG CCGACAGCGA CGGTGCTGGT GGTGTCCAAC
CCGGTCGATG TGCTCACCTA CCGCGCCTGG AGCGTGAGCG GTCAGGGGCG CGACAAGGTG
TTCGGGCAGG CGGGGGTGCT GGATACCGCG CGCATGAAGT GCTTCATCGC CGAGCAAACC
GGGTTTTCTG CACGGGATAT CACGGCGCTG GTGCTGGGCG GGCATGGCGA CAGCATGGTG
CCGCTGATGC GCTACTGCCA GATCGGCTCG GTGCCGCTGT CGCACTTCCT GTCCAGCGAG
CAGATCGAAC AGATTGTCGA GCGCACCCGT AAGGGCGGCG GCGAGATTCT GGGGTTGAAG
AAGACGGGGA GCGCCTGCGA TGCACCGGGC GTGGCCATTG CGCAGATGGT TGATGCGATC
GGCAATGGGC GGAACCGTAT TTTGCCGGCG GTGGCGATTC TCGAGGGCGA GTATGGGCGA
ACGGATATCG CCATGGGTGT GCCCTGCGTA CTGGCAGAGA AGGGGCTTGC GCGGGTGATC
GAGTTGCCGC TGGATGCGCA GGAACAGGCG ATGTTCGACC ACTCTGCAGA TCAGGTGGCG
CGGGATATTG CAGAGATGAA GGCGCTGTAG
|
|---|
| Protein sequence | MNKLTIVGAG LVGEAAAQII ARDELCRELV LMDVQGELAQ GKALDVWQAA VDSGSDTHVH
GGAKAEMLEG SELVVITAGV PRKPGQSRQD VLSTNLPILD SIMADIKHHA PTATVLVVSN
PVDVLTYRAW SVSGQGRDKV FGQAGVLDTA RMKCFIAEQT GFSARDITAL VLGGHGDSMV
PLMRYCQIGS VPLSHFLSSE QIEQIVERTR KGGGEILGLK KTGSACDAPG VAIAQMVDAI
GNGRNRILPA VAILEGEYGR TDIAMGVPCV LAEKGLARVI ELPLDAQEQA MFDHSADQVA
RDIAEMKAL
|
|---|
| |