| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0663 |
|---|
| Symbol | |
|---|
| ID | 5195173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 747598 |
|---|
| End bp | 748656 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640585118 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_001266015 |
|---|
| Protein GI | 148545913 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.241862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.120069 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGCG CCCCGGCCAA CCCCGGGACA AAAGAAGCCG TATTTAACCA CAAGCTCGCA
GCCGAAACCA AAGGCTGTGC GCCCGCCGAA TCGAGCATGT CCGAGATCAT TCAACTTAGC
GCAGAGGTAC CGTCCGAACT GGGCGGCCAA CGCCTCGACC AGGTCGCCGC CCAATTGTTC
GCCGAGTACT CGCGTTCGCG GCTAACTTCG TGGATCAAAG AGGGCCGCCT GACGGTCGAT
GGTGCAGTCG TGCGCCCTCG AGACCTTGTT CATGGTGGCT CTCTGCTTGC CCTGGAGGCC
GAACAAGAGG CCCAGGGCGA GTGGATCGCA GAAGATATCG AATTGGATAT CGTCTACGAA
GACGACCACA TCCTGGTGAT CAACAAGCCT GCCGGGCTGG TTGTGCACCC GGCGGCCGGG
CATGCCAGCG GCACCCTGCT CAACGCGCTG CTGCACCATG TGCCAGACAT CGTCAACGTG
CCGCGCGCCG GTATCGTGCA CCGCCTGGAC AAGGACACCA CCGGCCTGAT GGTGGTGGCC
AAGACCTTGC AGGCGCAGAC CAAGCTGGTC GAGCAGATGC AGGCCCGCAA GGTCAGCCGC
ATCTACGAGT GCATCGTGAT TGGCGTGGTG ACCGCCGGTG GCAAGATCGA CGCGCCCATC
GGTCGTCACG GCGGCATGCG CCAGCGCATG GCTGTAACCG ACGGCGGCAA GCCGGCGGTC
AGCCACTACC GCGTACTCAA GCGCTTCCGC TCGCACACCC ATGTGCGGGT CAAGCTGGAA
ACCGGCCGTA CCCACCAGAT TCGCGTGCAC ATGGCCCACG TGGGTTTCCC GCTGGTTGGC
GACCAGACGT ACGGCGGGCG CTTCCGTATT CCGCCCGCTG CCAGCCCGAC CATGGTCGAG
GCGGTCAAGA CCTTCCCGCG CCAGGCGCTG CATGCGCGTT TCCTTGCCTT GGCCCACCCG
ATTACCGGTG AAGTCATGAA GTGGGAATCG CCACTGCCGG ATGACTTCGT CTGGTTGCTG
TCGCTGCTGA ACCAGGACCG CGAGAGCTTC ATCGGATGA
|
|---|
| Protein sequence | MMSAPANPGT KEAVFNHKLA AETKGCAPAE SSMSEIIQLS AEVPSELGGQ RLDQVAAQLF
AEYSRSRLTS WIKEGRLTVD GAVVRPRDLV HGGSLLALEA EQEAQGEWIA EDIELDIVYE
DDHILVINKP AGLVVHPAAG HASGTLLNAL LHHVPDIVNV PRAGIVHRLD KDTTGLMVVA
KTLQAQTKLV EQMQARKVSR IYECIVIGVV TAGGKIDAPI GRHGGMRQRM AVTDGGKPAV
SHYRVLKRFR SHTHVRVKLE TGRTHQIRVH MAHVGFPLVG DQTYGGRFRI PPAASPTMVE
AVKTFPRQAL HARFLALAHP ITGEVMKWES PLPDDFVWLL SLLNQDRESF IG
|
|---|
| |