Gene Pput_0653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0653 
Symbol 
ID5193138 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp737684 
End bp739093 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content65% 
IMG OID640585108 
Productputative amidase 
Protein accessionYP_001266005 
Protein GI148545903 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.247147 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAGA AAACCGCGAT TGGCGAACTC ACCGCCGTCG AACTGCTCGA ACTGTACCAG 
CGCCGCCAGT TGTCACCCGT CGAGGTGGTC GACGATGTGC TGGCGCGCAT CGACCTGCAT
AACCCGGCGG TCAACGCCTA CTGCCATGTC GACGGCGAAG GTGCCCGCGC CGCCGCCCGT
GCCAGCGAAC AGCGCTGGCA ACGTGGCCAA CCCTGTGGCC GACTGGATGG CGTACCCGCC
TCGATCAAGG ACCTGACCCT GACCCGCGGC ATGCCTACCC GCAAGGGCTC GCGTACTACC
TCGGGTTCCG GGCCGTGGGA AATCGATGCG CCCTTCAGCG CCTTCATGCG TGAAGCCGGT
GCTGTGCTGG TAGGCAAGAC CACCACGCCG GAGTTCGGCT GGAAAGGCGT GACCGACAAC
CCGCTGTACG GCATTACCCG CAACCCTTGG GATACCAGGC TGACTGCCGG TGGTTCGTCT
GGTGGTGCTG CGGCAGCCGC CGCGCTGAAC CTGGGGGTGC TGCATCAGGG CAGCGATGCC
GGTGGTTCGA TTCGCATCCC TTGCGCCTTC ACCGGCACCT TCGGCATCAA ACCGACCTTC
GGCTATGTGC CGCAATGGCC GGCCAGCGCC ATGACCGTGC TGTCGCACCT GGGGCCGATG
ACGCGTACCG TGGACGACTC GGTGCTGATG CTTGACTGCG TAGCGCGCCC CGATGCCCGC
GACGGTTTGG CCGGCGCACC CCGGCAGGCG CCTTGGCTCA GCCAGCAGCA AGATCTGAGT
GGGCTACGCA TCGCCTACAG CGCCAACTTC GGTTACGTGC AGGTCGCCCC ACAGATCCAG
GCACTGGTGG CGCAAGCGGT GCAGCGCCTG GCGCGGCTGG GTGCGCAGGT AGAGGAAGTG
GACCCGGGCT TCAGCGACCC GCTGGAAACC TTCAATACCC TGTGGTTTGC CGGTGCGGCG
CGGTTGGCCA GTGCCTTGAG CGATGAGCAG AAAGCGTTGC TTGACCCGGG GCTGCGCTGG
ATTGCCGAAC AAGGCGCACA GATCAGCCTT GGCGAATACA CCCAGGCGCT AGAGGCACGG
GCAGAATTGA TTGCGAAGAT GAATGCCTTT CATCAGCGAT ATGACGTGCT GGTATCGCCG
ATGCTGCCGT TGGTGGCGTT CGAAGCCGGA CACAACGTGC CGCCTGGGTC GGGGATGGCG
CAATGGATGG AATGGACGCC GTTCAGCTAT CCGTTCAACC TGACCCAACA GCCGGCAGCC
TCGGTGCCCT GCGGGTTTAC CCGCGAGGGG TTGCCGGTGG GTCTGCAGGT GGTGGCCGGG
CGCTTTGCCG ATGAGCAAGT GCTGCGGGTG TGCAAGGTGT ATGAGCAGCA TTATCCGAGC
CGGCACTTGC AAGCACCGAT TACTGGCTGA
 
Protein sequence
MTQKTAIGEL TAVELLELYQ RRQLSPVEVV DDVLARIDLH NPAVNAYCHV DGEGARAAAR 
ASEQRWQRGQ PCGRLDGVPA SIKDLTLTRG MPTRKGSRTT SGSGPWEIDA PFSAFMREAG
AVLVGKTTTP EFGWKGVTDN PLYGITRNPW DTRLTAGGSS GGAAAAAALN LGVLHQGSDA
GGSIRIPCAF TGTFGIKPTF GYVPQWPASA MTVLSHLGPM TRTVDDSVLM LDCVARPDAR
DGLAGAPRQA PWLSQQQDLS GLRIAYSANF GYVQVAPQIQ ALVAQAVQRL ARLGAQVEEV
DPGFSDPLET FNTLWFAGAA RLASALSDEQ KALLDPGLRW IAEQGAQISL GEYTQALEAR
AELIAKMNAF HQRYDVLVSP MLPLVAFEAG HNVPPGSGMA QWMEWTPFSY PFNLTQQPAA
SVPCGFTREG LPVGLQVVAG RFADEQVLRV CKVYEQHYPS RHLQAPITG