| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0632 |
|---|
| Symbol | |
|---|
| ID | 5191472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 709827 |
|---|
| End bp | 710513 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640585084 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001265984 |
|---|
| Protein GI | 148545882 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000000159867 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATT CAAGAACTGC CCTCATCATC GGCGCCTCGC GCGGGCTTGG CCTGGGCTTG
GTACAACGCC TGCACGAAGA CGGTTGGCAC ATCACTGCCA CCGTCCGTAA CCCGCAGCAG
CCCGGCGCCC TGGCGAACGT GCCCGGCGTG CATATCGAGC AGCTGGAAAT GAACGACACC
GTTCAGCTCG ACAGCCTGAA GCAACGCCTG CAAGGCCAGG TGTTCGACCT GATATTCGTC
AACGCCGGGG TCATGGGCCC CCTGCCGCAA GACCTGGAGG CAGTCCACAA CAGCGACATT
GGCGATCTGT TCATGACCAA CGCAGTGGCG CCGATACGCG TGGCTCGCCG CCTGGTGGGT
CAAATACGCG AAGGCAGTGG TGTGCTGGCG TTCATGAGCT CGATCCTGGG AAGCGTCACC
ATCCCAGACG GTGGCGAAAT CTGCCTGTAC AAGGCCAGCA AGGCGGCACT GAACTCGATG
ATCAACAGCT TCTTCGTTGA GCAGCAGCGC CCGGACCTGT GCGTGCTGGC CATGCACCCG
GGCTGGGTGA AAACTGACAT GGGTGGCGAA AACGCCGAAA TCGATGTGCT CACCAGCACC
CGCGGCATGA TCGAACAGAT CAAGGCCCAG AGCGGCAAGG GCGGCCTGCG TTTCATCAAC
TACAAGGGCG AACCCTTGGT CTGGTGA
|
|---|
| Protein sequence | MANSRTALII GASRGLGLGL VQRLHEDGWH ITATVRNPQQ PGALANVPGV HIEQLEMNDT
VQLDSLKQRL QGQVFDLIFV NAGVMGPLPQ DLEAVHNSDI GDLFMTNAVA PIRVARRLVG
QIREGSGVLA FMSSILGSVT IPDGGEICLY KASKAALNSM INSFFVEQQR PDLCVLAMHP
GWVKTDMGGE NAEIDVLTST RGMIEQIKAQ SGKGGLRFIN YKGEPLVW
|
|---|
| |