Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0606 |
Symbol | |
ID | 5191772 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 677919 |
End bp | 679832 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640585058 |
Product | arginine decarboxylase |
Protein accession | YP_001265958 |
Protein GI | 148545856 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGTAC GACGCACACG CAAAGACGAT GGTAGCCAAT GGACCGTGGC TGACAGCCGC AGTGTTTATG GCATCCGCCA TTGGGGCGCT GGCTATTTCG CCATCAATGA AGCCGGGCGC GTCGAAGTAC GCCCCAACGG CCCTCAAAGT GCTCCGATCG ACCTGTTCGA ACAGGTCGAC GAACTGCGCC AGAGCGGCTT GTCGCTGCCC TTGCTGGTGC GCTTCCCTGA TATTCTGCAG GACCGTGTGC GCCAGCTGAC CGGTGCCTTC GACGCCAACA TCGCGCGCCT GGAATACCAG AGCCAATACA CCGCGCTGTA CCCGATCAAG GTCAACCAGC AGGAAGCGGT GGTGGAAAAC ATCATCGCCA CGCAAAACGT TTCCATCGGC CTGGAAGCCG GCTCCAAACC TGAGTTGCTG GCAGTGCTGG CGCTGGCGCC GAAGGGCGGC ACCATCGTCT GCAACGGCTA CAAGGACCGT GAGTTCATTC GCCTGGCGCT GATGGGTCAG AAGCTTGGCC ACAATGTGTT CATCGTCATC GAGAAAGAGT CGGAAGTGGC CCTGGTGATC GAAGAGGCCG CCGAGCTCAA GGTGAAACCA CAGGTTGGCC TGCGCGTTCG CCTGTCGTCG CTGGCCTCGA GCAAGTGGGC CGACACCGGT GGCGAGAAGT CCAAGTTTGG TTTGTCCGCC GCCCAGTTGC TTTCGGTGGT GCAGCGCTTC CGCGATGCGG GCCTGGATCA GGGCATCCGC CTGCTGCACT TCCACATGGG TTCGCAGATC GCCAACCTGG CTGACTACCA GCACGGTTTC AAGGAAGCCA TCCGTTATTA CGGCGAACTG CGTGCGCTGG GCCTGCCGGT CGACCACATC GACGTGGGTG GCGGCCTGGG TGTGGACTAC GACGGCACTC ACTCGCGCAA TGCCAGCTCG ATCAACTACG ACATGGACGA CTACGCCGGC GTGGTGGTGG GCATGCTCAA GGAGTTCTGC GACGCACAGG GCCTGCCGCA CCCGCATATC TTCTCGGAGA GTGGCCGTTC GCTGACCGCG CACCACGCCA TGCTGGTGAT CCAGGTGACC GACGTCGAGA AACACAATGA CGACGTACCG ACCATCGATA ACAAGGAAGC CCTGCCCGAG ACCGTGCAGT GGCTGGTCGA CCTGCTTGGC CCGACCGACA TCGAGATGGT CACCGAGACC TACTGGCGCG CCACCCACTA CATGGGTGAT GTGGCCGCGC AGTACGCTGA TGGCAAGATC AGCCTGGGCG AGAAAGCCTT GGCCGAGCAG TGCTATTTCG CCGTGTGCCG CCGTCTGCAC AACTCGCTGA AAGCCCGCCA GCGCTCGCAC CGCCAGGTGC TGGACGAGCT GAACGACAAG CTGGCCGACA AGTACATCTG CAACTTCTCG GTGTTCCAGA GCCTGCCAGA CACCTGGGCC ATCGGCCAGG TCCTGCCGAT CATCCCGCTG CACCGCCTGG ACGAAGAGCC GATGCGGCGT GCGGTATTGC AGGACCTGAC TTGCGATTCC GACGGCAAGA TCAACCAGTA CGTTGACGAG CAGAGCATCG AAACCAGCAT GCCGGTGCAT GCGGTGAAGG AGGGCGAGGA TTACCTGCTG GGCGTGTTCC TAGTGGGCGC CTACCAGGAA ATCCTGGGTG ACATGCACAA CCTGTTCGGT GACACCGACT CGGTGAACAT CTACCAGAAT GCCGACGGCA GCGTGTACCA CGCGGGTATC GAAACCCACG ACACCATCGA AGACATGCTG CGCTACGTGC ACCTGTCGCC GGAAGAGTTG ATGACGCATT ACCGCGACAA GGTCGCCAGC GCCAAGATCA CTGCGCGTGA GCGGACCCAG TATCTGGATG CCTTGCGCCT GGGCTTGACC CGGTCTTCGT ACCTGTCGTC GTAA
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Protein sequence | MSVRRTRKDD GSQWTVADSR SVYGIRHWGA GYFAINEAGR VEVRPNGPQS APIDLFEQVD ELRQSGLSLP LLVRFPDILQ DRVRQLTGAF DANIARLEYQ SQYTALYPIK VNQQEAVVEN IIATQNVSIG LEAGSKPELL AVLALAPKGG TIVCNGYKDR EFIRLALMGQ KLGHNVFIVI EKESEVALVI EEAAELKVKP QVGLRVRLSS LASSKWADTG GEKSKFGLSA AQLLSVVQRF RDAGLDQGIR LLHFHMGSQI ANLADYQHGF KEAIRYYGEL RALGLPVDHI DVGGGLGVDY DGTHSRNASS INYDMDDYAG VVVGMLKEFC DAQGLPHPHI FSESGRSLTA HHAMLVIQVT DVEKHNDDVP TIDNKEALPE TVQWLVDLLG PTDIEMVTET YWRATHYMGD VAAQYADGKI SLGEKALAEQ CYFAVCRRLH NSLKARQRSH RQVLDELNDK LADKYICNFS VFQSLPDTWA IGQVLPIIPL HRLDEEPMRR AVLQDLTCDS DGKINQYVDE QSIETSMPVH AVKEGEDYLL GVFLVGAYQE ILGDMHNLFG DTDSVNIYQN ADGSVYHAGI ETHDTIEDML RYVHLSPEEL MTHYRDKVAS AKITARERTQ YLDALRLGLT RSSYLSS
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