Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0552 |
Symbol | ribH |
ID | 5190191 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 618728 |
End bp | 619204 |
Gene Length | 477 bp |
Protein Length | 158 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640585004 |
Product | 6,7-dimethyl-8-ribityllumazine synthase |
Protein accession | YP_001265904 |
Protein GI | 148545802 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0054] Riboflavin synthase beta-chain |
TIGRFAM ID | [TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTGA AGACCATCGA AGGTACCTTC ATCGCCCCCA AAGGTCGCTA TGCTTTGGTG GTTGGCCGCT TCAACAGCTT CGTTGTCGAA AGCCTGGTAA GCGGTGCCGT TGATGCCCTG GTACGCCACG GTGTCAGCGA AAGCGACATC ACCATCATCC GTGCCCCGGG TGCATTCGAG ATCCCGCTGG TGGCACAGAA GGTCGCCCAG CAAGGCGCCT ACGACGCGAT CATCGCCCTG GGCGCCGTGA TCCGTGGCGG TACCCCGCAC TTCGAATACG TGGCGGGCGA GTGCACCAAG GGCCTGGCCC AGGTGTCCAT GGAGTTCGGT GTTCCGGTGG CCTTCGGCGT ACTGACCGTC GACTCCATCG AGCAAGCCAT CGAGCGTTCT GGCACCAAAG CCGGCAACAA AGGTGCTGAA GCTGCCCTGT CCGCACTGGA AATGGTCAGC CTGCTGGCGC AGTTGGAGGC CAAGTGA
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Protein sequence | MTLKTIEGTF IAPKGRYALV VGRFNSFVVE SLVSGAVDAL VRHGVSESDI TIIRAPGAFE IPLVAQKVAQ QGAYDAIIAL GAVIRGGTPH FEYVAGECTK GLAQVSMEFG VPVAFGVLTV DSIEQAIERS GTKAGNKGAE AALSALEMVS LLAQLEAK
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