| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0549 |
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| Symbol | |
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| ID | 5190181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 615688 |
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| End bp | 616818 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640585001 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001265901 |
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| Protein GI | 148545799 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGCC AAGCTGCCAT TCTCGACGCC CACTACATGG CCCGCGCGCT GGAGCTGGCG
CGTAAAGGCC TGTACACCAC CCACCCGAAC CCGCGCGTAG GCTGCGTGAT CGTGCGCGAT
GGCGAAGTGG TCGGTGAAGG CTGGCACGTG CGCGCCGGCG AGCCCCATGC CGAAGTGCAT
GCCCTGCGTC AGGCCGGTGA ACTTGCCCGC GGTGCTTGTG CCTACGTCAC CCTGGAACCA
TGCAGCCATC ATGGCCGTAC GCCACCGTGT GCCGAGGCAC TGGTCAAGGC CGGCGTGGCC
CGTGTCGTAG CCGCCATGCA GGACCCTAAC CCACAAGTGG CGGGGCAGGG CCTGCGGCGC
CTGGCCGAAG CTGGAATCGA AGTGGCCAGC GGGGTGCTCG AAGCCGAGGC CCGCGCCCTC
AACCCAGGCT TCCTCAAGCG TATGGAGCAC GGCCTGCCGT TCGTTCGCGC CAAACTGGCC
ATGAGCCTGG ATGGCCGCAC TGCCATGGCC AGTGGTGAAA GCCAGTGGAT CACCGGCCCG
GCCGCGCGCT CAGCCGTTCA GCGCTTGCGC GCCCGCTCCA GCGTGGTGCT GACCAGCGCC
GCCAGCGTGC TGGCAGACAA CGCACGCATG ACCGTGCGTG GCGCCGAGCT GGGCCTGGAT
GCCGAAACAG CCGCCCTGGC ACTCAGCCGC ACACCCTTGC GGGTGCTGGT CGATGGCCGC
CTGCGCCTGC CACTGGCGGC GCCGTTCTTC CAGGCGGGCC CAACGCTGGT GGTGACTGCT
GTCGCAGATG ACCCGCGCTA TGCCGCTGCC GGCCACGAAT TGCTCAGCTT GCCGGGCGAC
AATGGCCAGG TCGACCTGGG GGCGCTGCTT CATGCCCTGG CCGCCCGCGG CGTCAACGAA
GTCCTGCTGG AAGCCGGTGC CGGCCTGGTC GGTGCCTTTG CACGGCAAGG CCTGGTCGAC
GAGTACCAGC TGTTCGTCGC TGGCACCTTC CTCGGCTCTC AGGCCCGGCC GCTGCTGGAC
TGGCCGATGG ACAAGATGAG CGAAGCACCA CGGCTGAAAA TTACCGAAAT GCGAGCAGTG
GGCGATGACT GGCGGGTCAC GGCCATCCCT CTGCCAGCGC CCGGCGTATA A
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| Protein sequence | MPSQAAILDA HYMARALELA RKGLYTTHPN PRVGCVIVRD GEVVGEGWHV RAGEPHAEVH
ALRQAGELAR GACAYVTLEP CSHHGRTPPC AEALVKAGVA RVVAAMQDPN PQVAGQGLRR
LAEAGIEVAS GVLEAEARAL NPGFLKRMEH GLPFVRAKLA MSLDGRTAMA SGESQWITGP
AARSAVQRLR ARSSVVLTSA ASVLADNARM TVRGAELGLD AETAALALSR TPLRVLVDGR
LRLPLAAPFF QAGPTLVVTA VADDPRYAAA GHELLSLPGD NGQVDLGALL HALAARGVNE
VLLEAGAGLV GAFARQGLVD EYQLFVAGTF LGSQARPLLD WPMDKMSEAP RLKITEMRAV
GDDWRVTAIP LPAPGV
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