| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0542 |
|---|
| Symbol | |
|---|
| ID | 5193305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 611188 |
|---|
| End bp | 611898 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640584994 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001265894 |
|---|
| Protein GI | 148545792 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.855318 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGC CGTTGATCGA TCTGCATGAC CTGATGTTCG CCTGGCCAGG TCACCCGCCG
CTGCTGGATA TTCCGTCATT ACGCCTGGAC GCTGGTGAAG CGCTGTTTCT CAAGGGCCCC
AGCGGCAGTG GCAAGACGAC CTTGCTGGGC CTGCTGGGTG GGGTGAACGT GCCGGTCCAG
GGCCGCATCC AGTTGCTCGG TCAGGACCTT GGCAGCCTGA GCCAGGGCGC CCGCGACCGC
TTTCGGGTCG ATCACACCGG GTATATCTTC CAGCAGTTCA ACCTGCTGCC GTTCCTCTCG
GTACGTGAAA ACGTCGAGCT GCCCTGCCGC TTCTCGCGCA GCCGCAAGGC CCGCGCCGAG
CAGCGCCATG GCAGTGTTGA CCAGGCGGCC AGCACGCTGC TGACCCACCT GGGCCTGGGC
GACCCTGCCA TGCTCGCCCG CCGCGCCGAC AGCCTGTCGA TCGGCCAACA GCAACGGGTC
GCCGCCGCCC GCGCACTGAT CGGCCAGCCT GAGCTGGTGA TTGCCGACGA ACCGACCTCG
GCACTGGATG CAGACACCCG CGAAGCGTTC ATCCGCCTGC TGTTCGATGA GTGCCGTGCC
GCCGGTGCCA GCTTGTTGTT CGTCAGCCAC GACCAGAGCC TGGCACCGCT GTTCGACCGC
CACCTGTCGC TTGCCGAACT GAACCGCGCT GCCAAGCCCC AGGAGGCCTG A
|
|---|
| Protein sequence | MNQPLIDLHD LMFAWPGHPP LLDIPSLRLD AGEALFLKGP SGSGKTTLLG LLGGVNVPVQ
GRIQLLGQDL GSLSQGARDR FRVDHTGYIF QQFNLLPFLS VRENVELPCR FSRSRKARAE
QRHGSVDQAA STLLTHLGLG DPAMLARRAD SLSIGQQQRV AAARALIGQP ELVIADEPTS
ALDADTREAF IRLLFDECRA AGASLLFVSH DQSLAPLFDR HLSLAELNRA AKPQEA
|
|---|
| |