Gene Pput_0536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0536 
Symbol 
ID5192937 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp605788 
End bp606720 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content61% 
IMG OID640584988 
ProductNAD-dependent epimerase/dehydratase 
Protein accessionYP_001265888 
Protein GI148545786 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGACG CCCCCATCCT GATCACCGGC GGTGCCGGCT TCATTGGCTC CCACCTGTGC 
GATGCGTTGT TGGACAAAGG CTACGCCGTA CGCATTCTCG ACGACTTCTC CACCGGCCGG
CGAAGCAATC TGCAGGTCGA CCACCCACGG CTGGAACTGA TCGAAGGTGA TGTTGCCGAT
GCAGGGCTGG TCACTCAGGC TGCGGCTGGC TGCCGTGCTG TGGTGCATCT GGCGGCGGTA
GCGTCGGTTC AGGCCTCGGT CGAAGACCCG GTGCGTACCC ACCAGAGTAA CTTCATCGGT
ACCCTCAACG TTTGCGAAGC CATGCGCGTG CATGGCGTGC GCCGGGTGCT CTTCGCCTCC
AGCGCAGCGG TGTACGGCAA CAATGGTGAA GGGGAGTCGA TTTCCGAAGA CACGCCCAAG
GCGCCGTTGA CCCCTTATGC CGTGGACAAG CTGGCCAGTG AGCAGTACCT GGACTTCTAC
CGTCGCCAGC ATGGTCTGGA GCCGGTGGTG TTTCGCTTCT TCAATATCTT CGGGCCACGG
CAGGACCCTT CCTCACCGTA TTCCGGGGTG ATCAGCATCT TCTGCGAGCG CGTTGTGCAG
GGCTTGCCGA TTACAGTGTT CGGTGACGGC GAGCAGACCC GTGACTTCCT TTACGTGGGC
GACCTGGTGC AGGTGATGGT GCAGGCACTG GAGCAGCCGC AGGTTGAGGA GGGGGCGGTG
AACATCGGGC TGAACCAGGC GACCTCACTG AACCAGTTGC TGGCTGCGCT GGAGAAGGTT
GTAGGGAGCT TGCCAGCGAT CAGCTATGCG GCGGCGCGAT CGGGTGATAT CCGCCATTCG
CGAGCGGATA ACCAGCGGTT GTTGGCGCGG TTCAAATTTG CGCAGGTAAC GCCGATGGTT
GAAGGCCTGA CAAAGCTTCT CGGTAAAGGC TGA
 
Protein sequence
MADAPILITG GAGFIGSHLC DALLDKGYAV RILDDFSTGR RSNLQVDHPR LELIEGDVAD 
AGLVTQAAAG CRAVVHLAAV ASVQASVEDP VRTHQSNFIG TLNVCEAMRV HGVRRVLFAS
SAAVYGNNGE GESISEDTPK APLTPYAVDK LASEQYLDFY RRQHGLEPVV FRFFNIFGPR
QDPSSPYSGV ISIFCERVVQ GLPITVFGDG EQTRDFLYVG DLVQVMVQAL EQPQVEEGAV
NIGLNQATSL NQLLAALEKV VGSLPAISYA AARSGDIRHS RADNQRLLAR FKFAQVTPMV
EGLTKLLGKG