Gene Pput_0521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0521 
Symbol 
ID5190843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp589146 
End bp589907 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content62% 
IMG OID640584975 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001265875 
Protein GI148545773 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.413243 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACCG CATTTGTAAC CGGTGCTTCC TCAGGCTTTG GCCGCGCCAT CTGCTGCACC 
CTGATCGGCA AAGGCTACCG TGTGGTCGGT GGCGCCAGGC GCATGGACAA ACTGAAAGCA
CTTGAGGACG AACTGGGCGT AAATTTCATT CCGCTGGCGC TGGATGTCAC TGACCCCGAA
TCGCTCGAGA AGGCGGTCGA GCAGCTGCGT GAGGCGTCGC TGCAGATCGA TCTGCTGGTC
AACAACGCGG GGCTGGCGCT GGGCGTGGAT CGAGCCCAAA CCAGCAGTGC CGCAAACTGG
CAGCAGATGA TCGACACCAA CATCACCGGC TTGGCCATGG TCACCCACAA GATCCTGCCG
CAAATGGTGG AAGCCGATAG CGGCATGATC ATCAACATCG GCTCGATCGC CGGCACTTAC
CCCTACCCGG GCGGTAACGT GTATGGCGCC AGCAAGGCGT TCGTCCGCCA GTTCAGCCTC
AACCTGCGTG CCGACCTGGC TGGCACCCGC GTGCGGGTGA GCAACATCGA GCCGGGGTTG
TGCTCTGGCA CTGACTTCTC GGTGGTGCGC CTCAATGGCG ACCTGGACGC CGTGCAGGCC
TTGTATCGGG ATGTAGAGGC CCTCCTGCCG GAGGACATCG CAGCAACGGT AGCCTGGGTT
GCCGAGCAGC CGGCGCACGT GAATATCAAT ACCATCGAGA TCATGCCTGT GGCGCAGAGC
AGTGCGGCGC TGAATGTGGT GCGCAACTTG CCACGTGCCT GA
 
Protein sequence
MKTAFVTGAS SGFGRAICCT LIGKGYRVVG GARRMDKLKA LEDELGVNFI PLALDVTDPE 
SLEKAVEQLR EASLQIDLLV NNAGLALGVD RAQTSSAANW QQMIDTNITG LAMVTHKILP
QMVEADSGMI INIGSIAGTY PYPGGNVYGA SKAFVRQFSL NLRADLAGTR VRVSNIEPGL
CSGTDFSVVR LNGDLDAVQA LYRDVEALLP EDIAATVAWV AEQPAHVNIN TIEIMPVAQS
SAALNVVRNL PRA