Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0521 |
Symbol | |
ID | 5190843 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 589146 |
End bp | 589907 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640584975 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001265875 |
Protein GI | 148545773 |
COG category | [R] General function prediction only |
COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.413243 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCG CATTTGTAAC CGGTGCTTCC TCAGGCTTTG GCCGCGCCAT CTGCTGCACC CTGATCGGCA AAGGCTACCG TGTGGTCGGT GGCGCCAGGC GCATGGACAA ACTGAAAGCA CTTGAGGACG AACTGGGCGT AAATTTCATT CCGCTGGCGC TGGATGTCAC TGACCCCGAA TCGCTCGAGA AGGCGGTCGA GCAGCTGCGT GAGGCGTCGC TGCAGATCGA TCTGCTGGTC AACAACGCGG GGCTGGCGCT GGGCGTGGAT CGAGCCCAAA CCAGCAGTGC CGCAAACTGG CAGCAGATGA TCGACACCAA CATCACCGGC TTGGCCATGG TCACCCACAA GATCCTGCCG CAAATGGTGG AAGCCGATAG CGGCATGATC ATCAACATCG GCTCGATCGC CGGCACTTAC CCCTACCCGG GCGGTAACGT GTATGGCGCC AGCAAGGCGT TCGTCCGCCA GTTCAGCCTC AACCTGCGTG CCGACCTGGC TGGCACCCGC GTGCGGGTGA GCAACATCGA GCCGGGGTTG TGCTCTGGCA CTGACTTCTC GGTGGTGCGC CTCAATGGCG ACCTGGACGC CGTGCAGGCC TTGTATCGGG ATGTAGAGGC CCTCCTGCCG GAGGACATCG CAGCAACGGT AGCCTGGGTT GCCGAGCAGC CGGCGCACGT GAATATCAAT ACCATCGAGA TCATGCCTGT GGCGCAGAGC AGTGCGGCGC TGAATGTGGT GCGCAACTTG CCACGTGCCT GA
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Protein sequence | MKTAFVTGAS SGFGRAICCT LIGKGYRVVG GARRMDKLKA LEDELGVNFI PLALDVTDPE SLEKAVEQLR EASLQIDLLV NNAGLALGVD RAQTSSAANW QQMIDTNITG LAMVTHKILP QMVEADSGMI INIGSIAGTY PYPGGNVYGA SKAFVRQFSL NLRADLAGTR VRVSNIEPGL CSGTDFSVVR LNGDLDAVQA LYRDVEALLP EDIAATVAWV AEQPAHVNIN TIEIMPVAQS SAALNVVRNL PRA
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