| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0511 |
|---|
| Symbol | rpsD |
|---|
| ID | 5190543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 577365 |
|---|
| End bp | 577985 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640584965 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_001265865 |
|---|
| Protein GI | 148545763 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.595592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0197267 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGTT ACATTGGTCC AAAATGCAAA CTGTCTCGTC GTGAAGGCAC TGACCTGTTC
CTGAAGAGCG GCGTTCGCGC TCTGGAATCG AAGTGCAATA TCGAAGCAGC CCCAGGTATC
CACGGCCAGC GCCGTGGCCG TCAGTCCGAC TACGGCACCC AGCTGCGTGA GAAACAAAAA
GTCCGTCGTA TCTACGGTGT TCTGGAGCGT CAGTTCCGCG GTTACTACCA AGCTGCTGCC
TCGAAAAAAG GCGCAACCGG TGAGAACCTG CTGCAACTGC TCGAGTGCCG TCTGGATAAC
GTCGTTTACC GTATGGGCTT CGGCTCGACT CGTTCCGAGT CCCGTCAGCT GGTTTCGCAC
AAAGCGATCA GCGTCAACGG TAAGACTGTA AACATTCCAT CCTACCAAGT TCGTCCGGGT
GACGTGGTCG CAGTCCGCGA GAAATCGCTG GGCCAGTTGC GCATTGTTCA AGCCCTTGAA
CTGTGCGCCC AGCGTGGCCG CGTTGAGTGG GTTGACGTGG ATGCTGCTAA AAAGTCGGGC
GTTTTCAAGA ACGTTCCTGC TCGCAGCGAC CTGTCTGCCG ACATCAACGA AAACCTGATT
GTCGAGCTCT ACTCCAAGTA A
|
|---|
| Protein sequence | MARYIGPKCK LSRREGTDLF LKSGVRALES KCNIEAAPGI HGQRRGRQSD YGTQLREKQK
VRRIYGVLER QFRGYYQAAA SKKGATGENL LQLLECRLDN VVYRMGFGST RSESRQLVSH
KAISVNGKTV NIPSYQVRPG DVVAVREKSL GQLRIVQALE LCAQRGRVEW VDVDAAKKSG
VFKNVPARSD LSADINENLI VELYSK
|
|---|
| |