Gene Pput_0509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0509 
SymbolrpsM 
ID5190838 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp576585 
End bp576941 
Gene Length357 bp 
Protein Length118 aa 
Translation table11 
GC content55% 
IMG OID640584963 
Product30S ribosomal protein S13 
Protein accessionYP_001265863 
Protein GI148545761 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0099] Ribosomal protein S13 
TIGRFAM ID[TIGR03631] 30S ribosomal protein S13 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.176791 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00957459 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCCGTA TTGCAGGCGT CAACATTCCA GATAACAAGC ATACTGTTAT CTCGCTGACC 
TACATCTATG GTGTCGGTCG CACAACTGCA CAGAAGATTT GTGCAGACGC TGGTGTAAAC
CCAGCCGCTA AGATCAAGGA TCTGAGCGAC GAGCAAATCG AAACCCTGCG TGGCGAAGTC
GCGAAGTTCA CCACCGAAGG TGACCTGCGT CGTGACATCA ACATGAAGAT CAAGCGCTTG
ATGGACCTGG GTTGCTACCG CGGCCTGCGT CATCGTAAAG GTCTGCCGGT TCGCGGTCAG
CGCACCAAGA CCAACGCACG CACCCGTAAG GGCCCGCGTA AGCCGATCCG CAAGTAA
 
Protein sequence
MARIAGVNIP DNKHTVISLT YIYGVGRTTA QKICADAGVN PAAKIKDLSD EQIETLRGEV 
AKFTTEGDLR RDINMKIKRL MDLGCYRGLR HRKGLPVRGQ RTKTNARTRK GPRKPIRK