| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0501 |
|---|
| Symbol | rpsH |
|---|
| ID | 5190992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 572556 |
|---|
| End bp | 572948 |
|---|
| Gene Length | 393 bp |
|---|
| Protein Length | 130 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640584955 |
|---|
| Product | 30S ribosomal protein S8 |
|---|
| Protein accession | YP_001265855 |
|---|
| Protein GI | 148545753 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0096] Ribosomal protein S8 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000000611084 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.097534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATGC AGGACCCGTT AGCGGACATG CTAACTCGCA TCCGTAATGC CCAGATGGCT
GAAAAGTCCG TCGTAAGCAT GCCTTCCTCT ACCCTGAAGG TCGCGGTTGC CAAAGTTCTG
AAGGACGAAG GTTACATCGC TGGCTACCAG GTAACTGGTG AGGCCAAGCC TTCCCTGTCG
ATCGAACTGA AGTACTTCGA AGGCCGTCCG GTCATCGAGG AACTGAAGCG CTCCAGCCGT
CCAGGCCTGC GCCAGTACAA GGCCGTCACC GATCTGCCGA AAGTACGTGG CGGTCTGGGC
GTGTCTATCG TCTCCACCAA CAAAGGTGTG ATGACTGATC GCGCTGCGCG CGCTGCCGGT
GTCGGCGGCG AAGTTCTGTG CACAGTGTTC TAA
|
|---|
| Protein sequence | MSMQDPLADM LTRIRNAQMA EKSVVSMPSS TLKVAVAKVL KDEGYIAGYQ VTGEAKPSLS
IELKYFEGRP VIEELKRSSR PGLRQYKAVT DLPKVRGGLG VSIVSTNKGV MTDRAARAAG
VGGEVLCTVF
|
|---|
| |