| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0481 |
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| Symbol | |
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| ID | 5191204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 556851 |
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| End bp | 561050 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640584934 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001265835 |
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| Protein GI | 148545733 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0306779 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAGACC TACTGAATTT GCTGAAAAAC CAGGGTCAAG TCGAAGAGTT CGACGCCATC
CGCATCGGTC TGGCGTCGCC TGAAATGATC CGTTCGTGGT CGTTCGGTGA AGTTAAGAAG
CCGGAAACCA TCAACTACCG TACGTTCAAG CCTGAGCGTG ACGGCCTGTT CTGCGCCAAG
ATCTTTGGCC CAGTCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTCAAGCAC
CGCGGCGTAA TCTGCGAGAA GTGCGGCGTT GAAGTTGCCC TGGCGAAGGT TCGTCGTGAG
CGCATGGCGC ACATCGAGCT GGCCTCGCCG GTTGCCCACA TCTGGTTCCT GAAGTCGCTG
CCGTCCCGTA TCGGCCTGCT GATGGACATG ACCCTGCGTG ATATCGAGCG CGTGCTCTAC
TTCGAGAGCT ATGTCGTTAT CGACCCGGGC ATGACTACCC TGGAAAAGGG CCAGCTGCTG
AACGACGAGC AGTACTTCGA AGCGCTGGAA GAGTTCGGTG ACGACTTTGA CGCCCGCATG
GGTGCCGAGG CTGTCCGCGA GCTGCTGCAC GCTATCGACC TGGAGCACGA GATCGGCCGC
CTGCGCGAAG AAATTCCGCA GACCAACTCG GAAACCAAGA TCAAGAAGCT TTCCAAGCGT
CTGAAGCTGA TGGAAGCTTT CCAGGGCTCG GGCAACCTGC CTGAGTGGAT GGTCCTGACC
GTCCTGCCAG TGCTGCCGCC GGACCTGCGT CCGCTGGTTC CGCTGGATGG TGGCCGTTTC
GCGACTTCCG ACCTGAACGA CCTGTATCGT CGGGTGATCA ACCGTAACAA CCGTCTGAAG
CGCCTGCTGG ATCTGTCGGC GCCGGACATC ATCGTGCGCA ACGAAAAGCG CATGCTGCAG
GAAGCGGTCG ACGCCCTGCT GGACAACGGC CGCCGTGGTC GCGCCATCAC TGGCTCGAAC
AAGCGTCCGC TGAAGTCCCT GGCCGACATG ATCAAAGGTA AGCAAGGTCG CTTCCGTCAG
AACTTGCTCG GTAAGCGTGT TGACTACTCG GGCCGTTCGG TAATTACCGT AGGTCCGACC
CTGCGTCTGC ACCAGTGCGG TCTGCCGAAG AAGATGGCCC TCGAGCTGTT CAAGCCGTTC
ATTTTCGGCA AGCTGGAAAT GCGTGGTCTG GCGACCACCA TCAAGGCTGC CAAGAAGATG
GTCGAGCGCG AGCTGCCAGA GGTGTGGGAC GTTCTCGCCG AAGTGATTCG CGAACACCCC
GTACTGCTCA ACCGTGCACC GACTCTTCAC CGTCTGGGTA TCCAGGCGTT TGAACCCGTA
CTGATCGAAG GTAAGGCTAT CCAGCTGCAC CCGCTGGTCT GTGCTGCGTA CAACGCCGAC
TTCGACGGCG ACCAGATGGC CGTTCACGTG CCGCTGACCC TGGAAGCCCA GCTCGAAGCG
CGTGCGCTGA TGATGTCGAC CAACAACATC CTGTCGCCAG CCAACGGTGA GCCAATCATC
GTTCCGTCGC AGGACGTTGT ACTGGGTCTG TATTACATGA CCCGTGAAGC GATCAATGCC
AAGGGCGAGG GTCGCGTGTT CGCCGACCTG CAGGAAGTCG ACCGCGTATT CCGCGCCGGC
GAAGCCGCCC TGCACGCGAA AATCAAGGTT CGTATCAACG AAACCGTGAA AGAGCGTGAT
GGCTCGGTGG TCAAGAACAC CCGCATCGTC GACACCACCG TCGGTCGTGC GCTGCTGTTC
CAGGTTGTGC CAGCAGGTCT GCCGTACGAC GTGGTCAACC AGCCGATGAA GAAAAAGGCG
ATCTCTAAGC TGATCAACCA GTGCTATCGC GTGGTTGGTC TGAAAGAGAC CGTTATCTTC
GCCGACCAGC TGATGTACAC CGGTTTCGCT TACTCGACCA TTTCCGGCGT TTCCATCGGT
GTTAACGACT TCGTTATCCC GGACGAGAAA GCCCGCATCA TCGGTAACGC TACCGACGAA
GTGAAGGAAA TCGAGAGCCA GTACGCCTCC GGTCTGGTAA CCCAGGGCGA GAAGTACAAC
AAGGTCATCG ACTTGTGGTC GAAGGCGAAC GACGAAGTGT CCAAGGCGAT GATGGCCAAC
CTCTCGAAAG AGAAGGTCAT CGACCGCGAA GGCAAGGAAG TCGAGCAAGA GTCCTTCAAC
TCGATGTACA TGATGGCTGA CTCGGGTGCG CGGGGTTCCG CAGCCCAGAT CCGTCAGCTG
GCCGGTATGC GTGGTCTGAT GGCCAAGCCG GACGGCTCCA TCATCGAGAC GCCGATCACT
GCGAACTTCC GTGAAGGTCT GAGCGTACTT CAGTACTTCA TCTCGACTCA CGGTGCTCGT
AAGGGTCTGG CGGATACCGC ACTGAAAACC GCTAACTCCG GTTACCTGAC TCGTCGTCTG
GTGGACGTTG CCCAGGATCT GGTTGTGACC GAGATCGACT GCGGCACCGA TCAGGGCCTG
GTGATGACGC CACACATCGA AGGCGGCGAC GTTGTAGAGC CGCTGGGTGA GCGTGTATTG
GGTCGTGTCA TCGCCCGTGA CGTGTTCAAG CCAGGCACCG AGGACGTTAT CGTTCCGGCC
GGTACCTTGG TCGACGAGCA GTGGGTTGAG TTCATCGAGC TGAACAGCAT CGACGAAGTG
ATCGTGCGTT CGCCGATCAA CTGCGAAACC CGCTACGGCA TCTGCGCCAA GTGCTACGGT
CGTGACCTGG CTCGCGGTCA TCAGGTGAAC ATCGGTGAAG CTGTCGGCGT TATCGCTGCC
CAGTCGATCG GTGAGCCGGG TACCCAGCTG ACCATGCGTA CGTTCCACAT CGGTGGTGCC
GCAAGCCGTA CTTCGGCTGC CGACAGCGTC CAGGTGAAGA ATGGCGGTAT GGTGCGTCTG
CACAACCTGA AGCAGGTTGA GCGTGCCGAC GGTAACCTGG TTGCCGTATC GCGTTCGGGT
GAGTTGGCGA TTGCCGACGA GTTCGGTCGT GAGCGTGAGC GCTACAAGCT GCCTTACGGT
GCGGTGATTT CGGTCAAGGA AGGTGAAAAG GTCGAAGCTG GCGCCATCGT TGCCAAGTGG
GACCCGCACA CTCACCCGAT CGTTACCGAG CTGAAAGGTA CCGTGACCTT CGTGGGCATG
GAAGAAAACA TCACCATCAA GCGTCAGACC GATGAACTGA CTGGCTTGAC CAACATTGAA
GTACTGGACG TCAAGGATCG CCCTGCCGCA GGCAAGGAAA TCCGTCCAGC AATCAAGATG
GTCGATGCCT CAGGCAAGGA CCTGTACCTG CCAGGTACCG ACGTACCTGC CCAGTACTTC
CTGCCAGCCA ACGCCCTTGT CGGTGTGGCT GACGGTGCGC AGATCGGTGT TGGTGACGTT
ATCGCGCGTA TCCCGCAAGA AACGTCGAAG ACCCGTGACA TTACCGGTGG TCTGCCGCGT
GTTGCCGACC TGTTCGAAGC GCGTCGTCCG AAAGAAGCCT CGATTCTGGC TGAAGTCAGC
GGCACCATCG CATTCGGTAA AGAGACCAAG GGCAAGCGTC GCCTGGTAAT CACTCCGACC
GACGGTAGCG ATCCGTACGA AGAGCTGATT CCGAAGTGGC GCCACCTGAA CGTCTTCGAA
GGTGAACAGG TAAACCGCGG CGAAGTTATC TCCGACGGCC CGAGCGATCC GCATGACATC
CTGCGTCTGC TGGGTGTGAG CGCGCTGGCG AAGTACATCG TCAACGAGAT CCAGGATGTT
TACCGTCTGC AAGGCGTGAA GATCAACGAC AAGCACATCG AGACCATCCT GCGTCAGATG
CTGCGCAAGG TCGAGATCTC CGAGTCGGGC GATTCCAGCT TCATCAAGGG CGACCAGATG
GAACTGACTC AGGTGCTGGT AGAGAACGAG CGTCTCGCTG GCGAGGACAA GTTCATCTCC
AAGTTCACCC GTGTGCTGCT GGGTATCACC AAGGCCTCGC TGTCCACCGA GTCGTTCATC
TCCGCGGCTT CCTTCCAGGA AACCACCCGC GTACTGACCG AAGCGGCTGT AACCGGCAAG
CGCGACTACC TGCGCGGCCT GAAAGAGAAC GTGGTCGTGG GTCGTCTGAT CCCGGCTGGT
ACTGGTCTGG CCTACCACAG CGAGCGTAAG CGTCGCCGTG ATGCCGACAA ACCGCTGCGT
GTAAGCGCCA GTGAAGTGGA AGCTGCACTG ACCGAAGCGC TGAATTCCAG CGGTAACTAA
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| Protein sequence | MKDLLNLLKN QGQVEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMAHIELASP VAHIWFLKSL
PSRIGLLMDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
GAEAVRELLH AIDLEHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFQGS GNLPEWMVLT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLSAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IFGKLEMRGL ATTIKAAKKM VERELPEVWD VLAEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTREAINA KGEGRVFADL QEVDRVFRAG
EAALHAKIKV RINETVKERD GSVVKNTRIV DTTVGRALLF QVVPAGLPYD VVNQPMKKKA
ISKLINQCYR VVGLKETVIF ADQLMYTGFA YSTISGVSIG VNDFVIPDEK ARIIGNATDE
VKEIESQYAS GLVTQGEKYN KVIDLWSKAN DEVSKAMMAN LSKEKVIDRE GKEVEQESFN
SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLSVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EIDCGTDQGL VMTPHIEGGD VVEPLGERVL
GRVIARDVFK PGTEDVIVPA GTLVDEQWVE FIELNSIDEV IVRSPINCET RYGICAKCYG
RDLARGHQVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAADSV QVKNGGMVRL
HNLKQVERAD GNLVAVSRSG ELAIADEFGR ERERYKLPYG AVISVKEGEK VEAGAIVAKW
DPHTHPIVTE LKGTVTFVGM EENITIKRQT DELTGLTNIE VLDVKDRPAA GKEIRPAIKM
VDASGKDLYL PGTDVPAQYF LPANALVGVA DGAQIGVGDV IARIPQETSK TRDITGGLPR
VADLFEARRP KEASILAEVS GTIAFGKETK GKRRLVITPT DGSDPYEELI PKWRHLNVFE
GEQVNRGEVI SDGPSDPHDI LRLLGVSALA KYIVNEIQDV YRLQGVKIND KHIETILRQM
LRKVEISESG DSSFIKGDQM ELTQVLVENE RLAGEDKFIS KFTRVLLGIT KASLSTESFI
SAASFQETTR VLTEAAVTGK RDYLRGLKEN VVVGRLIPAG TGLAYHSERK RRRDADKPLR
VSASEVEAAL TEALNSSGN
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