| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0477 |
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| Symbol | rplA |
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| ID | 5190247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 550657 |
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| End bp | 551352 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640584930 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_001265831 |
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| Protein GI | 148545729 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0000803824 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0129211 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTAAGC TGACCAAACG CCAAAAGGCA ATCGCCGAGA AAATCGAAGC AGGCAAGGCC
TACAACTTCG AAGAAGCGGC AACTCTGCTG GCCTCGCTGC CTGCTGCCAA GTTCGTCGAG
TCCTACGACA TCGCCGTTAA CCTCGGTGTT GACCCGCGTA AATCCGACCA GGTCGTACGT
AGCGCTACCG TGCTGCCACA CGGCACTGGC AAGACCGTTC GCGTTGCTGT CTTCACCCAG
GGTCCAGCTG CTGAAGCTGC TCTGGCTGCC GGCGCTGATC GCGTAGGTAT GGATGATCTG
GCTGCCGAAA TGAAAGGCGG CGACCTGAAC TATGACGTCG TTATCGCATC GCCTGATGCC
ATGCGCGTTG TAGGTCAGCT GGGTCAGGTT CTGGGTCCTC GCGGCCTGAT GCCTAACCCG
AAAGTTGGTA CCGTGACCCC AGACGTAGCC ACTGCCGTGA AAAACGCCAA GGCTGGTCAG
GTTCGCTACC GTACCGACAA AAACGGTATC ATCCACACCT CCGTTGGCAA GATCGGCTTT
GAAGCTGACA AGCTGAAGGA AAACGTTGAA GCCCTGATCG CTGACCTGAA GCGTATCAAG
CCAGCTTCCT CGAAAGGTAT CTACGTTAAG CGCGTTACCC TGAGCACCAC CATGGGCCCA
GGTCTGGTCA TCGATCAGAG CTCGCTGAAC GTGTAA
|
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| Protein sequence | MAKLTKRQKA IAEKIEAGKA YNFEEAATLL ASLPAAKFVE SYDIAVNLGV DPRKSDQVVR
SATVLPHGTG KTVRVAVFTQ GPAAEAALAA GADRVGMDDL AAEMKGGDLN YDVVIASPDA
MRVVGQLGQV LGPRGLMPNP KVGTVTPDVA TAVKNAKAGQ VRYRTDKNGI IHTSVGKIGF
EADKLKENVE ALIADLKRIK PASSKGIYVK RVTLSTTMGP GLVIDQSSLN V
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