| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0474 |
|---|
| Symbol | secE |
|---|
| ID | 5194424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 549195 |
|---|
| End bp | 549563 |
|---|
| Gene Length | 369 bp |
|---|
| Protein Length | 122 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640584927 |
|---|
| Product | preprotein translocase subunit SecE |
|---|
| Protein accession | YP_001265828 |
|---|
| Protein GI | 148545726 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0690] Preprotein translocase subunit SecE |
|---|
| TIGRFAM ID | [TIGR00964] preprotein translocase, SecE subunit, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00000163291 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.025834 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCCA AAACTGAAGC CCAAGAATCG CGTTTTGATC TGTTCAAGTG GCTGGCTGTA
GTGGCTTTGG TGGTTGTTGG TGTCGTGGGT AATCAATATT ACTCCGCCTC TCCAATCCTG
TATCGCGTTC TTGTGCTTCT CGTCCTTGCT GCTGTCGCGG GCTTTGTAGC TCTGCAGACT
GCGAAGGGCA AGTCGTTCTT TGCGTTGGCG AAGGAAGCTC GTACCGAGAT TCGTAAAGTC
GTGTGGCCGA CCCGCCAGGA AACCACCCAG ACCACGCTGA TTGTCGTGGC TGTCGTGCTG
GTTATGGCAC TGCTGCTGTG GGGGCTCGAC TCCCTGCTCG GCTGGGCGGT CTCCTTGATC
GTTGGCTAA
|
|---|
| Protein sequence | MTPKTEAQES RFDLFKWLAV VALVVVGVVG NQYYSASPIL YRVLVLLVLA AVAGFVALQT
AKGKSFFALA KEARTEIRKV VWPTRQETTQ TTLIVVAVVL VMALLLWGLD SLLGWAVSLI
VG
|
|---|
| |