Gene Pput_0449 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0449 
Symbol 
ID5195479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp518963 
End bp519637 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content61% 
IMG OID640584893 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_001265803 
Protein GI148545701 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.402606 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCCCT ACGCTATTGC CCCCTCCATT CTCTCTGCCG ATTTTGCCCG CCTGGGTGAG 
GACGTCGACA AGGTATTGGC TGCGGGTGCA GACATCGTCC ACTTCGATGT CATGGACAAT
CACTATGTCC CCAACCTGAC CATCGGTCCG ATGGTTTGCA CCGCTCTGCG CAAGTACGGC
GTTACTGCGC CGATCGACGT GCACCTGATG GTCAGCCCGG TTGACCGCAT CATTGGCGAC
TTTATCGAAG CGGGTGCCAC CTACATCACC TTCCACCCTG AAGCCACGCA GCACATCGAC
CGTTCGCTTC AGCTGATCAA GGATGGTGGT TGCAAGGCCG GCCTGGTGTT CAACCCGGCC
ACCAGCCTGG ACGCCCTGAA GTATGTGATG GACAAGATCG ACATGGTGCT GCTGATGAGC
GTCAACCCAG GCTTCGGCGG GCAGAAGTTC ATCCCCGGCA CCCTCGACAA GCTGCGCGAA
GCGCGTGCGC TGATCGACGC CAGTGGCCGT GATATCCGTC TGGAGATCGA TGGTGGCGTG
AACGTCAACA ACATCCGCGA GATCGCTGCC GCTGGCGCCG ATACCTTCGT GGCCGGCTCG
GCGATCTTCA ACGCCCCGGA CTACCAGGAA GTGATCGCCA AGATGCGCGC CGAACTGGCC
CTGGCCCGCC CATGA
 
Protein sequence
MQPYAIAPSI LSADFARLGE DVDKVLAAGA DIVHFDVMDN HYVPNLTIGP MVCTALRKYG 
VTAPIDVHLM VSPVDRIIGD FIEAGATYIT FHPEATQHID RSLQLIKDGG CKAGLVFNPA
TSLDALKYVM DKIDMVLLMS VNPGFGGQKF IPGTLDKLRE ARALIDASGR DIRLEIDGGV
NVNNIREIAA AGADTFVAGS AIFNAPDYQE VIAKMRAELA LARP