| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0428 |
|---|
| Symbol | cca |
|---|
| ID | 5190866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 493393 |
|---|
| End bp | 494499 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640584872 |
|---|
| Product | multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase |
|---|
| Protein accession | YP_001265782 |
|---|
| Protein GI | 148545680 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.308892 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACATCT ACAAAGTTGG CGGCGCCGTG CGCGACCGCC TGCTCGGCCG CCCTGTCAGC
GATATCGACT GGCTGGTGGT GGGCGCCACC GTCGAAGAAA TGCTCGCCAA GGGCTACCGG
CCGGTGGGTG CCGATTTCCC GGTGTTCCTG CACCCGAAAA CCGGCGAGGA ATACGCCCTG
GCGCGCACCG AGCGCAAGAG TGGGCGAGGC TACGGCGGGT TCACCTTTCA CGCCAGCCCC
GACGTAACCC TGGAAGAGGA CCTGATCCGT CGCGACCTCA CCATCAATGC GATGGCCGAG
GATGAGGCCG GCACGGTATA CGACCCCTAC CAAGGCAAGC AAGACCTGGA TAAACGCCTG
CTACGCCATG TTTCCCCGGC ATTCGCCGAA GATCCTTTGC GTGTGCTGCG TGTTGCACGC
TTTGCTGCCC GTTACGCACC ACTGGGGTTC CGGGTTGCCG ATGAAACCTT GGCGCTGATG
CGTCAGATCA GCGCCTCGGG CGAACTGCAG GCACTCACTG CCGAGCGCAG CTGGAAGGAA
ATCGAGCGCG CGCTGATGGA AGTGCAACCG CAGGTGTTCT TCAAGGTGCT GAGCGCGTGC
GGGGCCCTGC AGGAGCTGCT GCCAGAGCTC GATGACAGCT CCCGGACATT GGCGGCGCTC
GAGCAGGCAG CGGTGCACGA ACAACCGCTG CACGTGCGCT GGGCCTGCCT GTTGCGGGGG
TTGTCACCGA CATCAATCAA AGCCGTCAAC CAGCGCCTGA AGGCACCGCG TGAGTGCCAG
GAACTGGCCA TGCTGACAGG GGAATGCCTG GCGCAGGGCA ATCAGGCGCT CGAACTGCCT
GCCACGGCAC TGCTGGAGCT GTTGCAGAAG TTCGATGTGT ACCGACGGCC GCAGCGATTT
GAGGATTTTT TGGTCGTTTG CGAGATGGCA GCGCGGGGCG ATGGCGAGCA GGGTTACCCA
CAGGCCGATT ACCTGCGACG CGCAGCAGCG GCGGCGCGAG CGGTGGATGT GAAGCCGTTG
GTGCAAGCCG GGCTGACGGG TCAGGCGCTG GGCGAAGCAC TCAAAGGTGA ACGGCTCAAA
GCGCTCGAAG CTTACCAGCG CGGTTAG
|
|---|
| Protein sequence | MHIYKVGGAV RDRLLGRPVS DIDWLVVGAT VEEMLAKGYR PVGADFPVFL HPKTGEEYAL
ARTERKSGRG YGGFTFHASP DVTLEEDLIR RDLTINAMAE DEAGTVYDPY QGKQDLDKRL
LRHVSPAFAE DPLRVLRVAR FAARYAPLGF RVADETLALM RQISASGELQ ALTAERSWKE
IERALMEVQP QVFFKVLSAC GALQELLPEL DDSSRTLAAL EQAAVHEQPL HVRWACLLRG
LSPTSIKAVN QRLKAPRECQ ELAMLTGECL AQGNQALELP ATALLELLQK FDVYRRPQRF
EDFLVVCEMA ARGDGEQGYP QADYLRRAAA AARAVDVKPL VQAGLTGQAL GEALKGERLK
ALEAYQRG
|
|---|
| |