Gene Pput_0422 details

Gene Information

• Locus tag: Pput_0422
• Symbol: dnaG
• ID: 5194713
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida F1
• Kingdom: Bacteria
• Replicon accession: NC_009512
• Strand: -
• Start bp: 487921
• End bp: 489903
• Gene Length: 1983 bp
• Protein Length: 660 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640584866
• Product: DNA primase
• Protein accession: YP_001265776
• Protein GI: 148545674
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0358] DNA primase (bacterial type)
• TIGRFAM ID: [TIGR01391] DNA primase, catalytic core

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCGGGC TGATTCCCCA GAGTTTCATT GACGACCTGA TCAACCGCCT CGACATCGTC 
GACGTGGTGA GTTCGCGCGT CCAGCTGAAA AAAACCGGCA AGAACTACTC GGCCTGCTGC 
CCGTTCCACA AAGAAAAAAC CCCGTCCTTC ACGGTCAGCC CCGACAAGCA GTTCTACTAC 
TGCTTCGGCT GTGGCGCCGG AGGCAACGCC TTGGGCTTTG TCATGGACCA CGACAACCTG 
GACTTCCCCC AGGCCGTCGA GGAACTGGCA CGCGCCGCTG GCATGGAAGT CCCCCGCGAG 
CAAGGCCGCC GTGACCAGAA GCCGCGCCAG CCCACTGACT CGCCACTGTA CCCGCTACTG 
GACGCCGCCT CGGAGTTTTA CCGCCAGGCC CTGCGCAGCC ACCCGTCACG CAAGGCAGCG 
GTGGACTACC TCAAGGGCCG CGGCCTGTCC GGGGAAATTG CCCGCGACTT CGGCCTGGGC 
TTTGCCCCGC CCGGCTGGGA CAACCTGCTC AAGCACCTGG GTGCCGACAC CCTGCAGCAG 
AACGTGATGA TCGATGCCGG CCTGCTGATC GAGAACGCCG AGAGCGGCAA GCGCTACGAC 
CGCTTCCGCG ACCGGGTGAT GTTCCCGATA CGTGACAGCC GCGGGCGCAT CATCGCCTTC 
GGTGGCCGGG TGCTCGGCGA CGACAAGCCC AAGTACCTGA ACTCCCCGGA AACCCCGGTG 
TTCCACAAGG GACAGGAGCT GTACGGGCTG TACGAGGCGC GCAAGCACAA CCGCAACCTC 
GACGAGATCA TCGTCGTCGA GGGCTACATG GACGTCATTG CCCTGGCCCA GCAAGGTCTG 
CGCAATGCCG TGGCCACCCT TGGCACCGCC ACCAGCGAAG AGCACCTCAA GCGCCTGTTC 
CGCGTGGTGC CCAGCGTGCT GTTCTGTTTT GACGGCGACC AGGCTGGGCG CAAGGCGGCC 
TGGCGCGCAC TGGAATCGAC ATTGTCGAAC CTGCAGGACG GCCGTCGCGC GCGCTTCCTG 
TTCCTGCCCG AAGGCGAAGA CCCGGACAGC CTGGTGCGTG CCGAAGGTAC CGACGCCTTC 
ATGGCCCGTA TCAACCAGCA CGCCCAACCG CTGGCCGACT ACTTCTTCGA GCAACTTGGC 
GTCGAAGCCG ACCCGCGCTC ACTGGAAGGC AAGGCGCATA TGGCGACCTT GGCCGCACCG 
TTGATCGAAA AGATCCCCGG CGCCAACCTG CGTCAGCTGA TGCGCAACCG CCTGAAGGAA 
ATCACCGGCC TCGACCCGCA GCAGGTCGAG CAGCTGGCGC AACAAGCGCC GGCGACCAGC 
AGCATGCCGG ACTACGACCC TGGCTACGAC TACGACGCCA TGGCCAGCTA CACCCCCGAC 
TACGGCGACA TGCCACAGCA CGACTATGCC CCCGTTCATC AGGAGCAGGC ATGGAAGCCC 
AACAAGGGTG GTAGCAAGAA GCCGTGGAGT GACAAACCCT GGGACAAGAA CCGCAAGAGC 
GGCAAGCCCT GGCAGCAACG CGACGAAGCA CCTCCCCGCG TGCCAGCACC GGTCGAGCCG 
CCCACCCTGG CCGCGCTGCG CACCCTGCTG CACCACCCAC TGCTGGCAGG CAAGGTGGAG 
GATGCCAGCC ACTTCGCCGA CGAAGAACAC CTGTACAGCC AGCTGCTGGT GGCGCTGATC 
GAAGCCGCGC AGAAAAATCC TGGGCTAAGC TCAATGCAGT TGATCGCACG TTGGCATGGC 
ACCGAACAGG GCCGCCTGCT GCGGGCCCTG GCGGAAAAGG AATGGCTTAT CGTGGCCGAC 
AACCTTGAAC AACAGTTTTT CGACACTATA ACTAGCTTGT CCGCCCGCCA ACGCGAGCGC 
AGCCTGGAAC AACTGCTCAG GAAATCACGT CAAAGCGAAT TGACCAGCGA GGAAAAAACC 
CAGCTCCTCG CCCTGCTGAG CCGAAATGTT CCCGCACAAA CGCCGACCTC ATCTGGCGCG 
TGA 

 

Protein sequence

MAGLIPQSFI DDLINRLDIV DVVSSRVQLK KTGKNYSACC PFHKEKTPSF TVSPDKQFYY 
CFGCGAGGNA LGFVMDHDNL DFPQAVEELA RAAGMEVPRE QGRRDQKPRQ PTDSPLYPLL 
DAASEFYRQA LRSHPSRKAA VDYLKGRGLS GEIARDFGLG FAPPGWDNLL KHLGADTLQQ 
NVMIDAGLLI ENAESGKRYD RFRDRVMFPI RDSRGRIIAF GGRVLGDDKP KYLNSPETPV 
FHKGQELYGL YEARKHNRNL DEIIVVEGYM DVIALAQQGL RNAVATLGTA TSEEHLKRLF 
RVVPSVLFCF DGDQAGRKAA WRALESTLSN LQDGRRARFL FLPEGEDPDS LVRAEGTDAF 
MARINQHAQP LADYFFEQLG VEADPRSLEG KAHMATLAAP LIEKIPGANL RQLMRNRLKE 
ITGLDPQQVE QLAQQAPATS SMPDYDPGYD YDAMASYTPD YGDMPQHDYA PVHQEQAWKP 
NKGGSKKPWS DKPWDKNRKS GKPWQQRDEA PPRVPAPVEP PTLAALRTLL HHPLLAGKVE 
DASHFADEEH LYSQLLVALI EAAQKNPGLS SMQLIARWHG TEQGRLLRAL AEKEWLIVAD 
NLEQQFFDTI TSLSARQRER SLEQLLRKSR QSELTSEEKT QLLALLSRNV PAQTPTSSGA