| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0421 |
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| Symbol | |
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| ID | 5194712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 486003 |
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| End bp | 487853 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640584865 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001265775 |
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| Protein GI | 148545673 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0853887 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGAA AAGCGCAACA GCAGTCTCGT ATCAAAGAGT TGATCACCCG CGGTCGTGAG
CAGGGCTACC TGACTTACGC GGAGGTCAAC GACCACCTGC CTGAGGATAT TTCAGATCCG
GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGAGT
GCTCCGGATG CGGATGCCCT TCTGTTGGCG GAAGCCGACA CCGATGAAGC CGCGGCCGAA
GAAGCCGCTG CTGCATTGGC GGCAGTTGAA ACCGATATCG GCCGCACGAC CGACCCGGTG
CGCATGTATA TGCGCGAAAT GGGTACTGTC GAGCTGCTGA CCCGCGAAGG CGAGATCGAA
ATCGCCAAGC GTATCGAGGA AGGCATTCGT GAAGTCATGG GCGCTATCGC CCACTTCCCG
GGCACTGTCG ACTACATTCT CGGCGAATAT GATCGCGTCA CCACCGAGGG TGGCCGCCTG
TCGGACGTTC TCAGCGGTTA CATCGACCCT GACGACAACA TTGCCGCGCC AACCGAAGAA
GTGCCGATCC CAGGCGCCAA GGCCGCTGCG GCGAAGGAAG AGTCCGACGA CGACGAAGAA
GAATCCGAAA GCGGTGACGA CGAGGAAGAG GCCGAGAGCG GCCCGGACCC GGTAGTCGCA
GCCCAACGCT TCGGTGCGGT ATCCGATCAG CTTCAGGCGA CCTCCAAGGT CCTGAAGAAA
AATGGTCGTA ACCACAAGGA AAGCATCGAG GCCCTGCAGG CCCTGGCTGA CCTGTTCATG
CCGATCAAGC TGGTACCGAA GCAGTTCGAG GTACTGGTCG AGCGTGTACG TGATGCCCTG
AACCGTCTGC GGCAGCAAGA ACGCGCCATC ATGCAGCTCT GCGTACGTGA CGCCCGCATG
CCGCGAGCCG ACTTCCTGCG CATGTTCCCA AGCAACGAAA CCGACCAGAC CTGGAGCGGT
GACCTGGCCA AGCGCAACAC CAAGTGGGCT GCCGCCCTGG GTGAAAAGAA CGCTGCCATC
GTCGCTTGCC AACAGAAGCT GATCGACCTT GAGACCGAAA CCGGCCTGAC CGTTGCCGAG
ATCAAGGAAA TCAACCGTCG CATGTCGATC GGTGAAGCCA AGGCCCGCCG CGCCAAGAAA
GAAATGGTCG AGGCGAACCT GCGTCTGGTG ATTTCCATCG CCAAGAAGTA CACCAACCGT
GGCCTGCAGT TCCTCGACCT GATCCAGGAA GGCAACATCG GTCTGATGAA AGCGGTGGAC
AAGTTCGAAT ACCGTCGCGG CTACAAGTTC TCGACCTATG CCACCTGGTG GATCCGTCAG
GCGATCACCC GTTCGATCGC CGACCAGGCA CGCACCATCC GGATTCCGGT GCACATGATC
GAGACGATCA ACAAGCTCAA CCGTATTTCC CGCCAAATGC TGCAGGAAAT GGGTCGCGAA
CCGACTCCGG AAGAGCTGGG CGAGCGCATG GAAATGCCTG AGGACAAAAT CCGCAAGGTA
CTGAAGATCG CCAAAGAGCC GATCTCCATG GAAACCCCGA TCGGTGACGA CGAAGATTCG
CACCTGGGCG ACTTCATCGA GGACTCGACC ATGCAGTCCC CGATCGACGT AGCCACGGTC
GAAAGCCTCA AGGAAGCCAC CCGTGACGTG CTCTCGGGCC TGACCGCACG TGAAGCCAAG
GTGCTGCGCA TGCGTTTCGG TATCGACATG AACACCGACC ACACCCTCGA AGAGGTGGGC
AAGCAGTTTG ACGTAACGCG TGAGCGGATC CGTCAGATCG AAGCGAAGGC GTTGCGCAAG
CTGCGCCACC CGACTCGCAG CGAGCACCTG CGCTCCTTCC TCGACGAGTG A
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| Protein sequence | MSGKAQQQSR IKELITRGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFES
APDADALLLA EADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEEGIR EVMGAIAHFP GTVDYILGEY DRVTTEGGRL SDVLSGYIDP DDNIAAPTEE
VPIPGAKAAA AKEESDDDEE ESESGDDEEE AESGPDPVVA AQRFGAVSDQ LQATSKVLKK
NGRNHKESIE ALQALADLFM PIKLVPKQFE VLVERVRDAL NRLRQQERAI MQLCVRDARM
PRADFLRMFP SNETDQTWSG DLAKRNTKWA AALGEKNAAI VACQQKLIDL ETETGLTVAE
IKEINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE
PTPEELGERM EMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDST MQSPIDVATV
ESLKEATRDV LSGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK
LRHPTRSEHL RSFLDE
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