Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0420 |
Symbol | |
ID | 5194819 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 482132 |
End bp | 485875 |
Gene Length | 3744 bp |
Protein Length | 1247 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640584864 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001265774 |
Protein GI | 148545672 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.285216 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTTGA AGCCGGCCAT TCTGTTGCTG ATCCTGATTT TGTGGAACAC AACGGCCGGC GCCCTGACCC TGACAGATGA GGAGAACGCC TGGCTGGCTG CCCACCCGCA GCTGAAACTG GGTGTAGACG CCTCTTGGCC ACCGTTCGAG TTTCGCGACC AGGAGGGCCG GTACCAGGGA TTGGCCGCCG ACTACATCGC CATGATCCAG CAGCGCCTGG GCGTAACGTT CAAACCGGTC GAACCCAGCA GCTGGACCGA GGTGCTGGCG CAGGCGCGGG AAAGCCGTAT CGACCTGCTG CCCGGCATCA TGTCCACCCC CGAACGCCAG GGCTTCCTGG CTTTCACTCG CCCGTACCTC GACTTCCCCA TTGTCATCCT CGCGCACAAA GGCGGCGCAC AACCGCGCAA GCTGGCTGAC CTGTACGGCC TGAAAGTTGC CGTGGTCGAG AACTACGCCC CGCACGAGTT GCTGCGTACC CACCACCCGG ACCTCAACCT GGTTGCCCTG CCAAACGTCA GCTCCACGCT GCAAGCCCTG GCTACCGACC AAGTGGATGC CGTGGTCGGC GACCTCGCTT CCAGTATCTG GAGCCTGCGC CAACTCAAGC TCGACGGCCT CTACGTCAGC GGCGAAACGC CCTACCGCTA CCAGTTGGCG ATGGCCGTTC CCCGCGACAA GAGCGTGCTG GTCGGCATTC TCGACAAAGT GATGGCCGAC ATGAGCAGCA GCGAAATCAG CCAGATCCAG CAGCACTGGG TGGGCAATGT GGTCGACCAG CGGATGTTCT GGTCCGACCT GCTGGTGTAT GGCCTGCCAA CGGTGCTGTT GCTGATGGCT GTGCTGGCAG TGGTCATTCG CATCAACCGC CGGCTCAGCT CGGAAATTTC CCGGCGCATC GCCCTTGAGC AAGAACTGCG CAGCAGCGAG TACCACTACC GCGGCCTGGT CGAGAGCCTG TCAGCCATCG CCTGGGAAGC CGATGCCAAC GACTTCACCT ACAGCTACGT TTCACCCCAT GCCGAAGATC TGCTCGGCTA CCCATTGAGT GACTGGCTCA GGCCCGGTTT CTGGCGCAGT ATCCTGCACC CGGAGGACGC GCTCTGGGCC CAGGCCTACT GCGACAGCGA GACCGCAGCG GGGCGCGACC ACAGCCTGGA CTACCGGGTG ATCCGGGCTG ACGGTCAGCC CCTTTGGATA CGCAACATCG TCAGTATGAT CGAGCACGGC CACCAGCCAG TGATGCGCGG GCTGATGATC GACATCAGCG AAACCAAGCG CACGGAGGAC GCCCTGCGTC TGTCCGAACA GAAGTTCGCC TCGGTATTCC AGCAGTGCCC CGATATCTTG CTGATCGCTC GCCACAGCGA TGGCTGCCTG CTGGAGGTGA ACGAGGCTTT CGAAGAGCAG ATCGGACTGC CCCCAGACCA GGTCATAGGC CGCACTGCCA CCGACCTTGA CCTGTGGGGC GTAGAGGGCA GTGGCCCGCT CCTGCTTCAA AGGTTGCACC AAGGGGGTAT CCGTAACCTG GAAATGAGCT TCCGCCGCAG CAACGGCCAA CTGTTCACCG GCCTGACTTC GGCTGAAACC TTCGAACTGG ACGGCACACC CGCGCTGGTA GTGGCGGTAC GCGACATCAG CCAGCTCAAG GAGACCCAGC AGCAGCTGCA AACTTCTGAA GAAAAGTTCG CAAAGGCCTT CCACGCTTCG CCCGACGGCC TGCTGCTGTC GCGCCAGAGC GACGGTTTGC TGCTGGAGGT GAACGAAGGC TTCTGCCGCC TCACCGGCTA CGACCTCAAC CCAACCATCG ACCAGACCTC GCTGGACCTG GGTATCTGGG TCGACCTCAA CGAGCGCAAA CGCCTGGTCG ACCAGCTCAA CCGTGACGGC TTCGTGCGCG ACTTCACCTG CCATATCCGC CGCAGCGACG GGCAGATCCG ACTGTGCGAG CTGTCCGCCC GGCCCCTGCC GATTACCGGC GTCGACTGCA TGCTGACCAT CGCTCGCGAC ATCACCGAGC GTCACCTGAT GCAAGAAAAA CTGCAGCTGG CCGCCACGGT GTTCGAGAAC ACTGCCGAAG GGGTGCTGAT TACCGACATT GACCAGCGCA TCAGTGCCGT CAACCGCGCC TTCAGCGAAA TCACCGGCTA CAGCGAGATC GAGGCCCTCG GCCAGACCCC GCGCCTGCTC GCCTCTGGCC AGCACGACAG CGCTTTCTAT CTGGCCATGT GGCACCAGCT TACCGCCGAG GGCCACTGGC AGGGCGAAAT CTACAACAAG CGCAAGAACG GCGAACTTTA CCCAAGCTGG CTGACCATCA GCGCCGTGCG CAACAGCGAC CGCGAGATCA CGCACTTCGT GGCGGTTTTT GCAGACATCT CCAGCATCAA GCACGCCCAG GCCAAACTCG ACTATCAGGC CCACCACGAC CCGCTGACCG GCTTGCCCAA TCGCACCTTG TTCGAAAACC GGCTGCAGGG CGTACTCACC TGCGCGCAGG TGTCCAACCG CCAAGGCGCA GTGCTGTTCC TGGACCTCGA CCGCTTCAAG CACATCAACG ACAGCCTTGG CCACCCGGTC GGCGACCTGC TGCTCAAGGG CATCGCCCAG CGCCTGAAAG AGCAGGTACG CGACGTTGAC ACCGTAGCCC GCCTGGGTGG CGACGAATTC ATCATTCTGC TGCCCGGCTT GCACAAGCCC AGTGACGCCA GCACTATCGC CAACAAACTA CTGGCCTGCT TCAACGCACC GTTCCAGGCC GGCGAGCATG AGTTTTTCAC CAGCGCCAGC ATCGGCATCA GCCTCTACCC ACAGGATGGC ACTGACGTCT CCACACTGAT CCGCAACGCC GACGCCGCCA TGTACCGCTC CAAGGCCAAA GGCCGTAACC GCGTCGAAGC CTACACCCGC GACCTCACCG CCCAGGCCAG CGAGCGCATC GCCCTGGAGC ATGAGCTGCG CCGGGCCGTC GAACGCAACG AAATGAGCCT GTGCTTCCAG CCCAAGCTCA GCCTGAAGAC CCAGAGCCTG GTGGGTGCCG AAGCGCTGAT CCGCTGGAGC CACCCGACCT TTGGTGAGGT ACCGCCGGAA CACTTCATCC ACTTGGCGGA AGAAAATGGC ACCATCCTGC AGCTCGGCGA CTGGGTACTG GAGCAAGCCT GCCGGCAGAT GCAGGCCTGG AAGCAGCACT ACGAACCCTT CGGCCCGCTG TCGATCAACC TTGCCGGCGC CCAGCTGCGC CACCCACACC TGGCACGACG CATCGAACAA CTGCTCAAGC ACTACCAGCT GAGGGCCGGT GACCTGCAGC TGGAAATCAC CGAGAACTTC ATCATGAGCC AGGCAGAGGA GGCCTTGGCC GTGCTGTACC AACTGAAAAA ACTGGGTGTA CAGCTAGCCA TCGACGACTT TGGCACCGGC TATTCCTCGC TGAGCTACCT GAAGCGCCTG CCGCTGGACA TCCTCAAGAT CGACAAGTCG TTCATCCGCG GCCTGCCCGA CGATCCACAC GACGCCGCCA TTGCCCGGGC GATCATTGCC CTGGGCCGCA GCATGCAGCT GACCATCATT GCCGAAGGCG TGGAGAACCA GGCCCAGCAA CGTTTTCTGG CGGCCGAGGG CTGCGAGCAG ATCCAGGGCT ACATCGTCAG CCTCCCGCTA CCGCCAGAGG AATTCGCGGC CGCGTTTCTT CGCATAGCAC TATCGGATCT TTCAGATGGC ACAGGTGCGA AACCCTCGTT ATAA
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Protein sequence | MSLKPAILLL ILILWNTTAG ALTLTDEENA WLAAHPQLKL GVDASWPPFE FRDQEGRYQG LAADYIAMIQ QRLGVTFKPV EPSSWTEVLA QARESRIDLL PGIMSTPERQ GFLAFTRPYL DFPIVILAHK GGAQPRKLAD LYGLKVAVVE NYAPHELLRT HHPDLNLVAL PNVSSTLQAL ATDQVDAVVG DLASSIWSLR QLKLDGLYVS GETPYRYQLA MAVPRDKSVL VGILDKVMAD MSSSEISQIQ QHWVGNVVDQ RMFWSDLLVY GLPTVLLLMA VLAVVIRINR RLSSEISRRI ALEQELRSSE YHYRGLVESL SAIAWEADAN DFTYSYVSPH AEDLLGYPLS DWLRPGFWRS ILHPEDALWA QAYCDSETAA GRDHSLDYRV IRADGQPLWI RNIVSMIEHG HQPVMRGLMI DISETKRTED ALRLSEQKFA SVFQQCPDIL LIARHSDGCL LEVNEAFEEQ IGLPPDQVIG RTATDLDLWG VEGSGPLLLQ RLHQGGIRNL EMSFRRSNGQ LFTGLTSAET FELDGTPALV VAVRDISQLK ETQQQLQTSE EKFAKAFHAS PDGLLLSRQS DGLLLEVNEG FCRLTGYDLN PTIDQTSLDL GIWVDLNERK RLVDQLNRDG FVRDFTCHIR RSDGQIRLCE LSARPLPITG VDCMLTIARD ITERHLMQEK LQLAATVFEN TAEGVLITDI DQRISAVNRA FSEITGYSEI EALGQTPRLL ASGQHDSAFY LAMWHQLTAE GHWQGEIYNK RKNGELYPSW LTISAVRNSD REITHFVAVF ADISSIKHAQ AKLDYQAHHD PLTGLPNRTL FENRLQGVLT CAQVSNRQGA VLFLDLDRFK HINDSLGHPV GDLLLKGIAQ RLKEQVRDVD TVARLGGDEF IILLPGLHKP SDASTIANKL LACFNAPFQA GEHEFFTSAS IGISLYPQDG TDVSTLIRNA DAAMYRSKAK GRNRVEAYTR DLTAQASERI ALEHELRRAV ERNEMSLCFQ PKLSLKTQSL VGAEALIRWS HPTFGEVPPE HFIHLAEENG TILQLGDWVL EQACRQMQAW KQHYEPFGPL SINLAGAQLR HPHLARRIEQ LLKHYQLRAG DLQLEITENF IMSQAEEALA VLYQLKKLGV QLAIDDFGTG YSSLSYLKRL PLDILKIDKS FIRGLPDDPH DAAIARAIIA LGRSMQLTII AEGVENQAQQ RFLAAEGCEQ IQGYIVSLPL PPEEFAAAFL RIALSDLSDG TGAKPSL
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