Gene Pput_0420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0420 
Symbol 
ID5194819 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp482132 
End bp485875 
Gene Length3744 bp 
Protein Length1247 aa 
Translation table11 
GC content62% 
IMG OID640584864 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001265774 
Protein GI148545672 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.285216 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTTGA AGCCGGCCAT TCTGTTGCTG ATCCTGATTT TGTGGAACAC AACGGCCGGC 
GCCCTGACCC TGACAGATGA GGAGAACGCC TGGCTGGCTG CCCACCCGCA GCTGAAACTG
GGTGTAGACG CCTCTTGGCC ACCGTTCGAG TTTCGCGACC AGGAGGGCCG GTACCAGGGA
TTGGCCGCCG ACTACATCGC CATGATCCAG CAGCGCCTGG GCGTAACGTT CAAACCGGTC
GAACCCAGCA GCTGGACCGA GGTGCTGGCG CAGGCGCGGG AAAGCCGTAT CGACCTGCTG
CCCGGCATCA TGTCCACCCC CGAACGCCAG GGCTTCCTGG CTTTCACTCG CCCGTACCTC
GACTTCCCCA TTGTCATCCT CGCGCACAAA GGCGGCGCAC AACCGCGCAA GCTGGCTGAC
CTGTACGGCC TGAAAGTTGC CGTGGTCGAG AACTACGCCC CGCACGAGTT GCTGCGTACC
CACCACCCGG ACCTCAACCT GGTTGCCCTG CCAAACGTCA GCTCCACGCT GCAAGCCCTG
GCTACCGACC AAGTGGATGC CGTGGTCGGC GACCTCGCTT CCAGTATCTG GAGCCTGCGC
CAACTCAAGC TCGACGGCCT CTACGTCAGC GGCGAAACGC CCTACCGCTA CCAGTTGGCG
ATGGCCGTTC CCCGCGACAA GAGCGTGCTG GTCGGCATTC TCGACAAAGT GATGGCCGAC
ATGAGCAGCA GCGAAATCAG CCAGATCCAG CAGCACTGGG TGGGCAATGT GGTCGACCAG
CGGATGTTCT GGTCCGACCT GCTGGTGTAT GGCCTGCCAA CGGTGCTGTT GCTGATGGCT
GTGCTGGCAG TGGTCATTCG CATCAACCGC CGGCTCAGCT CGGAAATTTC CCGGCGCATC
GCCCTTGAGC AAGAACTGCG CAGCAGCGAG TACCACTACC GCGGCCTGGT CGAGAGCCTG
TCAGCCATCG CCTGGGAAGC CGATGCCAAC GACTTCACCT ACAGCTACGT TTCACCCCAT
GCCGAAGATC TGCTCGGCTA CCCATTGAGT GACTGGCTCA GGCCCGGTTT CTGGCGCAGT
ATCCTGCACC CGGAGGACGC GCTCTGGGCC CAGGCCTACT GCGACAGCGA GACCGCAGCG
GGGCGCGACC ACAGCCTGGA CTACCGGGTG ATCCGGGCTG ACGGTCAGCC CCTTTGGATA
CGCAACATCG TCAGTATGAT CGAGCACGGC CACCAGCCAG TGATGCGCGG GCTGATGATC
GACATCAGCG AAACCAAGCG CACGGAGGAC GCCCTGCGTC TGTCCGAACA GAAGTTCGCC
TCGGTATTCC AGCAGTGCCC CGATATCTTG CTGATCGCTC GCCACAGCGA TGGCTGCCTG
CTGGAGGTGA ACGAGGCTTT CGAAGAGCAG ATCGGACTGC CCCCAGACCA GGTCATAGGC
CGCACTGCCA CCGACCTTGA CCTGTGGGGC GTAGAGGGCA GTGGCCCGCT CCTGCTTCAA
AGGTTGCACC AAGGGGGTAT CCGTAACCTG GAAATGAGCT TCCGCCGCAG CAACGGCCAA
CTGTTCACCG GCCTGACTTC GGCTGAAACC TTCGAACTGG ACGGCACACC CGCGCTGGTA
GTGGCGGTAC GCGACATCAG CCAGCTCAAG GAGACCCAGC AGCAGCTGCA AACTTCTGAA
GAAAAGTTCG CAAAGGCCTT CCACGCTTCG CCCGACGGCC TGCTGCTGTC GCGCCAGAGC
GACGGTTTGC TGCTGGAGGT GAACGAAGGC TTCTGCCGCC TCACCGGCTA CGACCTCAAC
CCAACCATCG ACCAGACCTC GCTGGACCTG GGTATCTGGG TCGACCTCAA CGAGCGCAAA
CGCCTGGTCG ACCAGCTCAA CCGTGACGGC TTCGTGCGCG ACTTCACCTG CCATATCCGC
CGCAGCGACG GGCAGATCCG ACTGTGCGAG CTGTCCGCCC GGCCCCTGCC GATTACCGGC
GTCGACTGCA TGCTGACCAT CGCTCGCGAC ATCACCGAGC GTCACCTGAT GCAAGAAAAA
CTGCAGCTGG CCGCCACGGT GTTCGAGAAC ACTGCCGAAG GGGTGCTGAT TACCGACATT
GACCAGCGCA TCAGTGCCGT CAACCGCGCC TTCAGCGAAA TCACCGGCTA CAGCGAGATC
GAGGCCCTCG GCCAGACCCC GCGCCTGCTC GCCTCTGGCC AGCACGACAG CGCTTTCTAT
CTGGCCATGT GGCACCAGCT TACCGCCGAG GGCCACTGGC AGGGCGAAAT CTACAACAAG
CGCAAGAACG GCGAACTTTA CCCAAGCTGG CTGACCATCA GCGCCGTGCG CAACAGCGAC
CGCGAGATCA CGCACTTCGT GGCGGTTTTT GCAGACATCT CCAGCATCAA GCACGCCCAG
GCCAAACTCG ACTATCAGGC CCACCACGAC CCGCTGACCG GCTTGCCCAA TCGCACCTTG
TTCGAAAACC GGCTGCAGGG CGTACTCACC TGCGCGCAGG TGTCCAACCG CCAAGGCGCA
GTGCTGTTCC TGGACCTCGA CCGCTTCAAG CACATCAACG ACAGCCTTGG CCACCCGGTC
GGCGACCTGC TGCTCAAGGG CATCGCCCAG CGCCTGAAAG AGCAGGTACG CGACGTTGAC
ACCGTAGCCC GCCTGGGTGG CGACGAATTC ATCATTCTGC TGCCCGGCTT GCACAAGCCC
AGTGACGCCA GCACTATCGC CAACAAACTA CTGGCCTGCT TCAACGCACC GTTCCAGGCC
GGCGAGCATG AGTTTTTCAC CAGCGCCAGC ATCGGCATCA GCCTCTACCC ACAGGATGGC
ACTGACGTCT CCACACTGAT CCGCAACGCC GACGCCGCCA TGTACCGCTC CAAGGCCAAA
GGCCGTAACC GCGTCGAAGC CTACACCCGC GACCTCACCG CCCAGGCCAG CGAGCGCATC
GCCCTGGAGC ATGAGCTGCG CCGGGCCGTC GAACGCAACG AAATGAGCCT GTGCTTCCAG
CCCAAGCTCA GCCTGAAGAC CCAGAGCCTG GTGGGTGCCG AAGCGCTGAT CCGCTGGAGC
CACCCGACCT TTGGTGAGGT ACCGCCGGAA CACTTCATCC ACTTGGCGGA AGAAAATGGC
ACCATCCTGC AGCTCGGCGA CTGGGTACTG GAGCAAGCCT GCCGGCAGAT GCAGGCCTGG
AAGCAGCACT ACGAACCCTT CGGCCCGCTG TCGATCAACC TTGCCGGCGC CCAGCTGCGC
CACCCACACC TGGCACGACG CATCGAACAA CTGCTCAAGC ACTACCAGCT GAGGGCCGGT
GACCTGCAGC TGGAAATCAC CGAGAACTTC ATCATGAGCC AGGCAGAGGA GGCCTTGGCC
GTGCTGTACC AACTGAAAAA ACTGGGTGTA CAGCTAGCCA TCGACGACTT TGGCACCGGC
TATTCCTCGC TGAGCTACCT GAAGCGCCTG CCGCTGGACA TCCTCAAGAT CGACAAGTCG
TTCATCCGCG GCCTGCCCGA CGATCCACAC GACGCCGCCA TTGCCCGGGC GATCATTGCC
CTGGGCCGCA GCATGCAGCT GACCATCATT GCCGAAGGCG TGGAGAACCA GGCCCAGCAA
CGTTTTCTGG CGGCCGAGGG CTGCGAGCAG ATCCAGGGCT ACATCGTCAG CCTCCCGCTA
CCGCCAGAGG AATTCGCGGC CGCGTTTCTT CGCATAGCAC TATCGGATCT TTCAGATGGC
ACAGGTGCGA AACCCTCGTT ATAA
 
Protein sequence
MSLKPAILLL ILILWNTTAG ALTLTDEENA WLAAHPQLKL GVDASWPPFE FRDQEGRYQG 
LAADYIAMIQ QRLGVTFKPV EPSSWTEVLA QARESRIDLL PGIMSTPERQ GFLAFTRPYL
DFPIVILAHK GGAQPRKLAD LYGLKVAVVE NYAPHELLRT HHPDLNLVAL PNVSSTLQAL
ATDQVDAVVG DLASSIWSLR QLKLDGLYVS GETPYRYQLA MAVPRDKSVL VGILDKVMAD
MSSSEISQIQ QHWVGNVVDQ RMFWSDLLVY GLPTVLLLMA VLAVVIRINR RLSSEISRRI
ALEQELRSSE YHYRGLVESL SAIAWEADAN DFTYSYVSPH AEDLLGYPLS DWLRPGFWRS
ILHPEDALWA QAYCDSETAA GRDHSLDYRV IRADGQPLWI RNIVSMIEHG HQPVMRGLMI
DISETKRTED ALRLSEQKFA SVFQQCPDIL LIARHSDGCL LEVNEAFEEQ IGLPPDQVIG
RTATDLDLWG VEGSGPLLLQ RLHQGGIRNL EMSFRRSNGQ LFTGLTSAET FELDGTPALV
VAVRDISQLK ETQQQLQTSE EKFAKAFHAS PDGLLLSRQS DGLLLEVNEG FCRLTGYDLN
PTIDQTSLDL GIWVDLNERK RLVDQLNRDG FVRDFTCHIR RSDGQIRLCE LSARPLPITG
VDCMLTIARD ITERHLMQEK LQLAATVFEN TAEGVLITDI DQRISAVNRA FSEITGYSEI
EALGQTPRLL ASGQHDSAFY LAMWHQLTAE GHWQGEIYNK RKNGELYPSW LTISAVRNSD
REITHFVAVF ADISSIKHAQ AKLDYQAHHD PLTGLPNRTL FENRLQGVLT CAQVSNRQGA
VLFLDLDRFK HINDSLGHPV GDLLLKGIAQ RLKEQVRDVD TVARLGGDEF IILLPGLHKP
SDASTIANKL LACFNAPFQA GEHEFFTSAS IGISLYPQDG TDVSTLIRNA DAAMYRSKAK
GRNRVEAYTR DLTAQASERI ALEHELRRAV ERNEMSLCFQ PKLSLKTQSL VGAEALIRWS
HPTFGEVPPE HFIHLAEENG TILQLGDWVL EQACRQMQAW KQHYEPFGPL SINLAGAQLR
HPHLARRIEQ LLKHYQLRAG DLQLEITENF IMSQAEEALA VLYQLKKLGV QLAIDDFGTG
YSSLSYLKRL PLDILKIDKS FIRGLPDDPH DAAIARAIIA LGRSMQLTII AEGVENQAQQ
RFLAAEGCEQ IQGYIVSLPL PPEEFAAAFL RIALSDLSDG TGAKPSL