Gene Pput_0404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0404 
Symbol 
ID5191220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp467899 
End bp468810 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content65% 
IMG OID640584850 
Productpyrroloquinoline quinone biosynthesis protein PqqB 
Protein accessionYP_001265761 
Protein GI148545659 
COG category[R] General function prediction only 
COG ID[COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I 
TIGRFAM ID[TIGR02108] coenzyme PQQ biosynthesis protein B 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.295796 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACATTC AGGTTCTCGG CTCCGCCGCC GGTGGCGGGT TCCCGCAGTG GAACTGCAAC 
TGCGTCAACT GCAAGGGCTA CCGTGATGGC ACCCTGAAAG CCACCGCGCG CACCCAGTCA
TCCATCGCCC TGTCCGACGA CGGTGTGCAC TGGATATTGT GCAATGCCTC GCCCGACATC
CGCGCCCAAC TGCAGGCCTT TGCGCCGATG CAGCCGGCCC GGGCACTGCG CGACACCGGT
ATCAACGCCA TCGTCCTGCT GGACAGCCAG ATCGACCACA CCACCGGCCT GCTCAGCCTG
CGCGAAGGCT GCCCGCATCA GGTGTGGTGC ACGGACATGG TCCACCAGGA CCTGACCACC
GGTTTCCCGC TGTTCAACAT GCTCAGCCAC TGGAACGGTG GCTTGCAGTG GAACCGTATC
GAGCTGGAAG GCAGCTTCGT GATCGACGCC TGCCCCAACC TCAAGTTCAC CCCCTTCCCC
CTGCGCAGCG CCGCGCCGCC CTACTCCCCG CACCGCTTCG ACCCGCACCC GGGCGATAAC
CTGGGTTTGA TGGTCGAAGA CACCCGCACC GGCGGCAAGC TGTTCTACGC CCCGGGCCTG
GGCCAGGTCG ACGAAAAGCT GCTGGCGATG ATGCACGGTG CCGACTGCCT GCTGGTCGAC
GGCACCCTGT GGGAAGACGA CGAAATGCAG CGCCGTGGCG TAGGCACCCG CACCGGCCGC
GAGATGGGTC ACCTGGCCCA GAACGGCCCT GGCGGCATGC TGGAAGTGCT CGACGGCTTC
CCGCGCCAGC GCAAGGTACT TATCCACATC AACAACACCA ACCCGATTCT CGACGAAGAC
TCACCCGAGC GCGCCGAAGT CCTGCGCCGA GGCGTCGAAG TTGCCTTCGA TGGCATGAGC
ATCGCGTTGT AA
 
Protein sequence
MYIQVLGSAA GGGFPQWNCN CVNCKGYRDG TLKATARTQS SIALSDDGVH WILCNASPDI 
RAQLQAFAPM QPARALRDTG INAIVLLDSQ IDHTTGLLSL REGCPHQVWC TDMVHQDLTT
GFPLFNMLSH WNGGLQWNRI ELEGSFVIDA CPNLKFTPFP LRSAAPPYSP HRFDPHPGDN
LGLMVEDTRT GGKLFYAPGL GQVDEKLLAM MHGADCLLVD GTLWEDDEMQ RRGVGTRTGR
EMGHLAQNGP GGMLEVLDGF PRQRKVLIHI NNTNPILDED SPERAEVLRR GVEVAFDGMS
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