Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0404 |
Symbol | |
ID | 5191220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 467899 |
End bp | 468810 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640584850 |
Product | pyrroloquinoline quinone biosynthesis protein PqqB |
Protein accession | YP_001265761 |
Protein GI | 148545659 |
COG category | [R] General function prediction only |
COG ID | [COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I |
TIGRFAM ID | [TIGR02108] coenzyme PQQ biosynthesis protein B |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.295796 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTACATTC AGGTTCTCGG CTCCGCCGCC GGTGGCGGGT TCCCGCAGTG GAACTGCAAC TGCGTCAACT GCAAGGGCTA CCGTGATGGC ACCCTGAAAG CCACCGCGCG CACCCAGTCA TCCATCGCCC TGTCCGACGA CGGTGTGCAC TGGATATTGT GCAATGCCTC GCCCGACATC CGCGCCCAAC TGCAGGCCTT TGCGCCGATG CAGCCGGCCC GGGCACTGCG CGACACCGGT ATCAACGCCA TCGTCCTGCT GGACAGCCAG ATCGACCACA CCACCGGCCT GCTCAGCCTG CGCGAAGGCT GCCCGCATCA GGTGTGGTGC ACGGACATGG TCCACCAGGA CCTGACCACC GGTTTCCCGC TGTTCAACAT GCTCAGCCAC TGGAACGGTG GCTTGCAGTG GAACCGTATC GAGCTGGAAG GCAGCTTCGT GATCGACGCC TGCCCCAACC TCAAGTTCAC CCCCTTCCCC CTGCGCAGCG CCGCGCCGCC CTACTCCCCG CACCGCTTCG ACCCGCACCC GGGCGATAAC CTGGGTTTGA TGGTCGAAGA CACCCGCACC GGCGGCAAGC TGTTCTACGC CCCGGGCCTG GGCCAGGTCG ACGAAAAGCT GCTGGCGATG ATGCACGGTG CCGACTGCCT GCTGGTCGAC GGCACCCTGT GGGAAGACGA CGAAATGCAG CGCCGTGGCG TAGGCACCCG CACCGGCCGC GAGATGGGTC ACCTGGCCCA GAACGGCCCT GGCGGCATGC TGGAAGTGCT CGACGGCTTC CCGCGCCAGC GCAAGGTACT TATCCACATC AACAACACCA ACCCGATTCT CGACGAAGAC TCACCCGAGC GCGCCGAAGT CCTGCGCCGA GGCGTCGAAG TTGCCTTCGA TGGCATGAGC ATCGCGTTGT AA
|
Protein sequence | MYIQVLGSAA GGGFPQWNCN CVNCKGYRDG TLKATARTQS SIALSDDGVH WILCNASPDI RAQLQAFAPM QPARALRDTG INAIVLLDSQ IDHTTGLLSL REGCPHQVWC TDMVHQDLTT GFPLFNMLSH WNGGLQWNRI ELEGSFVIDA CPNLKFTPFP LRSAAPPYSP HRFDPHPGDN LGLMVEDTRT GGKLFYAPGL GQVDEKLLAM MHGADCLLVD GTLWEDDEMQ RRGVGTRTGR EMGHLAQNGP GGMLEVLDGF PRQRKVLIHI NNTNPILDED SPERAEVLRR GVEVAFDGMS IAL
|
| |