| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0362 |
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| Symbol | |
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| ID | 5195577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 413065 |
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| End bp | 415845 |
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| Gene Length | 2781 bp |
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| Protein Length | 926 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640584808 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001265719 |
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| Protein GI | 148545617 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.324524 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCTT GCCAGCCCTC GGGACATGAT GCAACCTTGC CAAATCCGCC GCAGCCACAA
GGCAGCGTTC CCTCTTCAAG CGAGTCTTCG ATGAAAAGCC AACCCGATGC CGCCAGCCGT
GTGGCGGCCG AGGTCGTGAC ACAGTTACCC GTGCCCTCGC GGCTCGGCAT GCTGCGTTTC
GAAAGGCTCA ACGAAGCCAC CTGGGCCATG CTCTACCTTG ACCCAGCCTG TGAGCGCCAG
TTCGGCCTGA AAACCGGCGA GTTGTGTGCC CTGATTGACG CGCCCTACGC CAGCCTGATG
GAACCCGAAG CACGCTACCG GCTGCACGAC GAAATCCAGT TGCAACTGGC CCAGCGCGGC
TACTATCGCG TGCGCTACAC CCTGCACACG CCGAGCACCT CGCTGCGCCT GCTGGAAGCG
GGTGAAGCCT ACAAGCAACA CAACCGCCAG CTGTTGCGCG GCTACCTGAG CGTGCTCGAC
GACCAGCAGG AAGAGACCGG CGAACCCGGC GCCAGCGACC TGGAGTCACG CAACAACCGC
CTGCAACTGG CCCTGCAGCT GAACCAGCGC ACGCAGCAAG AACAACTGGA GCACCTGGAG
CGGGTGCGCG GCCAGCAGGA CCTTATCCTG CGCCTTGCCC GCCATCGCTA CAGCGCGGGC
AACTCGCTGC TCGAAGCGGC CCAGCTAATC ACCCAGAGCG CCTGCGAAAT CTACAAGGTC
GACAGCGCCA GCATCTGGCA CCTGGAAGAC CAACGCCTGG AACCGATCAT CGCCTGGTAC
CGCGACGCAC AGGAGCACCG CCAGCCCGAA GCCATCGATG CCAGCCGCTT CCCCGACTAC
CTGGATGCAC TGCACGCAAG CCGCGCCATC GACGCTCACA ACGCCGGCCA CGACCCGCGC
ACCCGCGCCC TGGCGCAAAG CATGCGCCCG GAAAACAAGG CCATGCTCGA CGCCAGCATC
CGTGTCGATG GCCAGGTGAT CGGCGTGTTG TGCCTGGAGC AAACCGGCCA GCCACGGGCC
TGGCAGTCGG ACGAGATTGC CTTTGCCGGC GAGCTGGCCG ACCAGTTCGC CCAAGTGATC
ACAAACCACA AACGACGGGC CGCGGCCAGC GCCCTGCACC TGTTCCAGCG TGCGGTCGAG
CAGAGCGCCA GCGCCTTTCT GCTGGTGAAC CGCGACGGCC GGGTGGAGTA CGTCAACCCC
AGCTTCACCG CCATCACCCA GTACAGTACC GACGAAGTGC AGGGCCGCCA GCTGGGTGAG
CTACCGGCAC TGGAGAACCT CAGCGAACTG CTGTTCGACT CGCCGTCGAG CCTGGCCATG
GGCAACAGTT GGCAGGGCGA GTTCAAGAGC CGGCGCAAAA ACCTGGAGCC GTACTGGGGC
CAGTTGTCGA TTTCCAAGGT GTACGGAGAC AACCGTGAGC TGACCCACTA CATCGGCATC
TACGAAGACG TCACCCAGAC CAAGCTGGCC CAGCAACGCA TTGAACGCCT GGCTTACACC
GACAACCTCA CCAACCTGGG CAACCGCCCG GCGTTCATCC GCAGCCTGGA CGAGCGCTTC
GCCCGCGATG GCGAAAGCTC GATGTGCCTG CTGCTGGTGG ACATCGACAA CTTCAAGCGC
ATCAACGACA GCCTAGGCCA CCAGACCGGC GACAAGCTGT TGATCAGCCT GGCCAGGCGT
TTGCGCAACA GCCTGCACAG CGGTGGCATC CTGGCGCGCT TTGCCAGTAA CGAGTTCGCC
GTGCTGCTCG ACCACACCAG CCTTGAAGAT GGCCAAGGCG TCGCCCAGCA GTTGCTGTGC
ACCCTCGACA AGCCGATGTT CGTCGACAAC CAGCTGATCA ACGTCACCGC CTCGGTAGGC
CTGGCCTGTG CTCCGTTGCA CGGCGTCGAC CCGGCCAGCC TGATGAAGAA TGCCGGCCTT
GCATTGCACA AGGCCAAGGC CAACGGTAAA CACCAGGTAC AGGTGTTTAC CGAAGTGCTC
AACGCCGAAG CCAGCTACAA GCTGTTCGTC GAGAACAACC TGCGCCGTGC CCTGACCCAG
AATGAGCTGG ACGTGTTCTA CCAGCCCAAG CTGTGCCTGC GCAGCGGTCG CCTGCTGGGC
CTGGAAGCGC TGCTGCGCTG GAACCACCCC GAACGCGGCA TGATCCGCCC GGACCAGTTC
ATCAGCGTGG CCGAGGAAAC CGGCCTGATC ATCCCTATCG GCAAATGGGT GGTGCGCCAG
GCGTGCTGCA TGAGCCAGCA ACTGCGCAAG GCCGGCCTGG GCAACCTGCA TGTAGCCATC
AACCTGTCGC CCAAACAGTT CTCCGACCCG GACCTGGTGG CGTCGATCAG CACCATCCTC
AAGGAAGAAG CCCTGCCCCC GCACCTGCTG GAGCTGGAGT TGACCGAAGG CCTGCTGCTG
GAAGCCAGCG AAGACACCCA CCGCCAGCTG GACGAGCTGA AGGCCCTGGG CCTGACCTTG
GCCATGGACG ACTTCGGCAC CGGTTATTCG TCGCTGAGCT ACCTGAAGAA GTTTCCGATC
GACATCCTCA AGATCGATCG CAGCTTCATC AACGAAATCC CCGACAACCA GGACGACATG
GAAATCACCT CGGCGGTGGT GGCCATGGCC CACAACCTGA AGCTGAAGGT GGTGGCCGAA
GGGATCGAGA CGCCGGAGCA ACTGGCGTTC CTGCGCCGCC ACCGCTGCGA CGTGGGCCAG
GGCTACCTGT TCGACCGGCC GATTCCCGGG CGCGAGCTGG CCGAGCGGCT GAAGCGCTAT
CCGCGTGGCC CGGTGGCCTG A
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| Protein sequence | MAACQPSGHD ATLPNPPQPQ GSVPSSSESS MKSQPDAASR VAAEVVTQLP VPSRLGMLRF
ERLNEATWAM LYLDPACERQ FGLKTGELCA LIDAPYASLM EPEARYRLHD EIQLQLAQRG
YYRVRYTLHT PSTSLRLLEA GEAYKQHNRQ LLRGYLSVLD DQQEETGEPG ASDLESRNNR
LQLALQLNQR TQQEQLEHLE RVRGQQDLIL RLARHRYSAG NSLLEAAQLI TQSACEIYKV
DSASIWHLED QRLEPIIAWY RDAQEHRQPE AIDASRFPDY LDALHASRAI DAHNAGHDPR
TRALAQSMRP ENKAMLDASI RVDGQVIGVL CLEQTGQPRA WQSDEIAFAG ELADQFAQVI
TNHKRRAAAS ALHLFQRAVE QSASAFLLVN RDGRVEYVNP SFTAITQYST DEVQGRQLGE
LPALENLSEL LFDSPSSLAM GNSWQGEFKS RRKNLEPYWG QLSISKVYGD NRELTHYIGI
YEDVTQTKLA QQRIERLAYT DNLTNLGNRP AFIRSLDERF ARDGESSMCL LLVDIDNFKR
INDSLGHQTG DKLLISLARR LRNSLHSGGI LARFASNEFA VLLDHTSLED GQGVAQQLLC
TLDKPMFVDN QLINVTASVG LACAPLHGVD PASLMKNAGL ALHKAKANGK HQVQVFTEVL
NAEASYKLFV ENNLRRALTQ NELDVFYQPK LCLRSGRLLG LEALLRWNHP ERGMIRPDQF
ISVAEETGLI IPIGKWVVRQ ACCMSQQLRK AGLGNLHVAI NLSPKQFSDP DLVASISTIL
KEEALPPHLL ELELTEGLLL EASEDTHRQL DELKALGLTL AMDDFGTGYS SLSYLKKFPI
DILKIDRSFI NEIPDNQDDM EITSAVVAMA HNLKLKVVAE GIETPEQLAF LRRHRCDVGQ
GYLFDRPIPG RELAERLKRY PRGPVA
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