| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0312 |
|---|
| Symbol | |
|---|
| ID | 5195553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 356185 |
|---|
| End bp | 356922 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640584758 |
|---|
| Product | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase |
|---|
| Protein accession | YP_001265669 |
|---|
| Protein GI | 148545567 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0106] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase |
|---|
| TIGRFAM ID | [TIGR00007] phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.115806 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00637547 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATTA TCCCCGCTAT CGATCTGAAG GACGGTGCTT GCGTGCGCCT GCGCCAGGGC
CGCATGGAAG ACTCTACGGT ATTTTCCGAC GACCCGGTGA GCATGGCCGC CAAGTGGGTC
GAGGGTGGCT GCCGCCGCCT GCACCTGGTC GACCTCAACG GCGCCTTCGA AGGCCAGCCG
GTCAATGGTG AAGTGGTTAC CGCCATCGCC AAGCGCTACC CGAACCTGCC GATCCAGATC
GGCGGCGGTA TCCGTTCGCT GGAAACCATC GAACACTACG TCAAGGCTGG CGTCAGCTAC
GTGATCATTG GCACCAAGGC CGTCAAGCAG CCCGAGTTCG TCGCTGAAGC GTGCAAAGCC
TTCCCGGGCA AGGTCATCGT CGGCCTGGAC GCCAAGGACG GTTTCGTCGC CACCGACGGT
TGGGCCGAAG TGAGCTCGGT GCAGGTCATC GACCTGGCCA GGCGTTTCGA GGCCGATGGC
GTCTCGGCGA TCGTCTACAC CGACATCGCA AAGGACGGCA TGATGCAGGG CTGCAACGTG
CCCTTCACCA AGGCACTGGC TGAAGCCACC CGTATCCCGG TGATCGCCTC GGGCGGCATT
CACAACCTGG GCGACATCAA GGCGCTGCTG GACGCCAAGG CCCCGGGCAT CATCGGCGCC
ATCACCGGCC GTGCCATCTA CGAAGGCACC CTGGATGTCG CTGAGGCCCA GGCCTTCTGT
GACAACTACC AAGGCTGA
|
|---|
| Protein sequence | MLIIPAIDLK DGACVRLRQG RMEDSTVFSD DPVSMAAKWV EGGCRRLHLV DLNGAFEGQP
VNGEVVTAIA KRYPNLPIQI GGGIRSLETI EHYVKAGVSY VIIGTKAVKQ PEFVAEACKA
FPGKVIVGLD AKDGFVATDG WAEVSSVQVI DLARRFEADG VSAIVYTDIA KDGMMQGCNV
PFTKALAEAT RIPVIASGGI HNLGDIKALL DAKAPGIIGA ITGRAIYEGT LDVAEAQAFC
DNYQG
|
|---|
| |