| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0310 |
|---|
| Symbol | hisH |
|---|
| ID | 5193964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 355258 |
|---|
| End bp | 355896 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640584756 |
|---|
| Product | imidazole glycerol phosphate synthase subunit HisH |
|---|
| Protein accession | YP_001265667 |
|---|
| Protein GI | 148545565 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0118] Glutamine amidotransferase |
|---|
| TIGRFAM ID | [TIGR01855] imidazole glycerol phosphate synthase, glutamine amidotransferase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00630292 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACGG TAGCCGTAAT CGACTATGGC ATGGGTAACC TGCACTCGGT GGCCAAGGCG
CTTGAGCACG TAGGTGCCGG TAAAGTGCTG GTGACCAGCG ATGCCTCAGT GATCCGCGAG
GCCGACCGTG TGGTGTTCCC GGGCGTGGGC GCGATTCGCG ACTGCATGGC CGAAATCCGC
CGCCTGGGCT TCGACAGCCT GGTCCGCGAA GTCAGCCAGG ACCGCCCGTT CCTCGGCATC
TGCGTCGGTA TGCAGGCGCT GCTCGAGCAC AGTGAGGAAA ACAACGGCGT CGACTGCATT
GGCCTGTTCC CTGGCCAGGT GCGCTTTTTC GGCAAAGACC TGCAAGAAGA GGGCGAGCAC
CTGAAGGTGC CGCACATGGG CTGGAACGAA GTCAGCCAGA CCATCGACCA CCCGCTGTGG
CACGACATCC CTGACCGCGC ACGTTTCTAC TTCGTGCACA GCTACTACAT CAATGCCGGC
AAGCCGGGCC AGGTGGTGGG ACGCGGTCAC TATGGCGTCG ATTTCGCCGC AGCGCTGGCC
GACGGTTCGC GTTTTGCCGT GCAGTTCCAC CCGGAGAAGA GCCATACCCA TGGCCTGCAG
CTGCTGCAGA ACTTCATCGC CTGGGACGGG CGCTGGTAA
|
|---|
| Protein sequence | MQTVAVIDYG MGNLHSVAKA LEHVGAGKVL VTSDASVIRE ADRVVFPGVG AIRDCMAEIR
RLGFDSLVRE VSQDRPFLGI CVGMQALLEH SEENNGVDCI GLFPGQVRFF GKDLQEEGEH
LKVPHMGWNE VSQTIDHPLW HDIPDRARFY FVHSYYINAG KPGQVVGRGH YGVDFAAALA
DGSRFAVQFH PEKSHTHGLQ LLQNFIAWDG RW
|
|---|
| |