| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0288 |
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| Symbol | |
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| ID | 5193807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 333880 |
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| End bp | 336177 |
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| Gene Length | 2298 bp |
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| Protein Length | 765 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640584733 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001265646 |
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| Protein GI | 148545544 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.566614 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.515749 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCCC AAAGCATCAC GCCAGTGTTC ACCCCCTTCA GTCAAAGCGG CAATTGCCTC
AAGCCGCTGG CCTTCTGCGT CGCCGTCGCC ATCAGCGGTG GTGCAGTGGC TGCCGACGGC
AAACCCCTTG AACTCGACGC CACACAGATC GAAGACAGTG CATTACTGCC TGCCGACGAT
GCCGGCCAGT TGGGCTACAC GGTCGAGAGC ACCCGCAGCT CCACTGGCCT GGCACTGACG
CCACGGCAGA CACCGCAATC GGTTACCACC ATCACGCGCC AGCAGATGGA TGACCGCGAC
ATCCATACCA TCGAGCAGGC ATTGGAAACC GCCCCAGGCG TAACGGCCAA CAAGTCCGAG
GTGGGTGGGC GCACCGACTA CCGCGCGCGT GGTTACTCGA TCAGCAACTG GAAGGTCGAT
GGCCTGCAGA CCCAGGGCGG CTCCGATTTC AGTGGCAGCG GCAATGCGCT GAACATGGAC
CTGTACGAAC GCATCGACAT CGTGCGCGGC GCCAACGGCC TGCTGGGCGG CACCGGCGAT
CCCTCGGCCA CCGTCAACCT GATCCGCAAG GCACCGACCA AAACCTTCGG CGGCAGTGCC
TATGCCACTT ACGGCAGCTG GGACAAGCGT CGTCTGGGGG CGGACTTGAA CCTGCCGCTG
TCCGAAGATG GCCGCCTGCG TTCGCGCTTC GTGATGACCC AGCAGGATGC CAACTCCTTC
CGCGACAACC AGTCCGAACG TTCCCGCGCC GCGTTGGCCA ATTTCGAGTT CGACCTGGAC
GACGCCACTA CCTTGGGCGC CGGTTACCAG TATGAATACA ACAAGGTCGT GGGTGGCGGC
TGGGGCGCGA ACATCCCGAT CTGGTACCGC GACGGCAGCA AGACCGACTT GCCGCGCAGC
ACCAACGTGG TGCCCAGCTG GAGCTTTGGC GAGTACACCA CCCGCACTGC GTTCGGTTCG
CTCGAGCACC GCTTCGACAA CGACTGGACC CTGGACCTGA AAGCCGCCCA AGCCACCACC
GAAGCCCTGA ACCATCGCGG CCTTGCCAAG GTGAACTCAG CTGGGCGCGG CAGCTACGGT
GGCTATTGGG ACCAGGACGG CAGCGGCGCC GTGCTGAACG GTTTGCACAG CTCCAGCGAC
ACCACCCAGC AGTCGGCGCA GATCGACCTG TCCGGCCCGT TCCAGCTGTT TGGCCGCACC
CACCAGGCCA TGGTCGGCTA CAACGACAGC CGCACCGTCG GCTGGTCGCC TCAGTACACC
TGCACCATGG TCGGCGACGG CATGACCAGC GCGCCTGCAC TGGGTTGCCA GTTCCGCGCC
AACAACGGCT TCCCGGTGAC CGACTGGCAC AATGGCGTGG ATGACGACTA CGACCTCATC
GCCTCGCGCA CCGGCCTTCA CAGCAAGACC ACCACCCGTC TGCAGGGCAT GTACGCCGCC
ACCCGCCTGA GCATCACCGA CCCGTTGTCG GTGATCGTTG GCGTGCGCAC CAGCAACTAT
TCCTCGGTCA CCCGCAGCGT GGCCGGCGAG CGCAGCAGCC AGGAAGAAAA CGGCATCGTC
ACCCCCTACC TGGGCGCGGT GTATGACCTC AATGACAACT ACTCGGTATA CGCCAGCTAC
ACCGACATCT TCACCCCGCA AACCTCTGAA ACCAGCAGTG GCAGCAAGGT CGAGCCGATT
CGTGGGCAAA GCTACGAGAC AGGTATCAAG GGTGAGTGGT TCGATGGCCG CCTGAACGCC
TCGGCGGCCT ACTTCCGCAC CAAGCAGGAA AACAAGGCCG TGTTGGACGG CGACCTGACC
ACCCCGACTG GCGGCAGCGC CTACAAGGCC GGCTCCGGGC AGGAAACCGA CGGTATCGAC
CTGGAAGTCG CAGGCGCCCT GACCCCCAAC TGGAACGTCT ACGCCGGTTA CACCTACCTG
CACTTTCGCC GCGTCGACAG CGACGGCCGC AGCGACCCGT CGCACTTGTT CAAGGCCTCC
ACCACCTACC GCCTGAGCGG CCCGCTCGAC CGCCTGACCC TGGGCGCCGG CGTGACTGCG
CAGACCAACA TCCGCGCCAT CTCCAGCCCG GCTGGCCAGC CCACGAACGG TGTGAGCAAT
GGTGCCACTG ACGTGAACTG GTCCGGTTAT GCCATCTGGA ATGCCATGGC CAAGTACCAG
CTCAGCGACA ACACCAGTGT CAGCCTCAAC GCCAACAACC TGTTCGACAA GCACTACTAC
AGCCAGTACG GGTTCTATGC CGGGGCGATC TACGGCGACC CGCGTAACCT GTCGTTGACG
GTAAGCACCG CGTTCTGA
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| Protein sequence | MNPQSITPVF TPFSQSGNCL KPLAFCVAVA ISGGAVAADG KPLELDATQI EDSALLPADD
AGQLGYTVES TRSSTGLALT PRQTPQSVTT ITRQQMDDRD IHTIEQALET APGVTANKSE
VGGRTDYRAR GYSISNWKVD GLQTQGGSDF SGSGNALNMD LYERIDIVRG ANGLLGGTGD
PSATVNLIRK APTKTFGGSA YATYGSWDKR RLGADLNLPL SEDGRLRSRF VMTQQDANSF
RDNQSERSRA ALANFEFDLD DATTLGAGYQ YEYNKVVGGG WGANIPIWYR DGSKTDLPRS
TNVVPSWSFG EYTTRTAFGS LEHRFDNDWT LDLKAAQATT EALNHRGLAK VNSAGRGSYG
GYWDQDGSGA VLNGLHSSSD TTQQSAQIDL SGPFQLFGRT HQAMVGYNDS RTVGWSPQYT
CTMVGDGMTS APALGCQFRA NNGFPVTDWH NGVDDDYDLI ASRTGLHSKT TTRLQGMYAA
TRLSITDPLS VIVGVRTSNY SSVTRSVAGE RSSQEENGIV TPYLGAVYDL NDNYSVYASY
TDIFTPQTSE TSSGSKVEPI RGQSYETGIK GEWFDGRLNA SAAYFRTKQE NKAVLDGDLT
TPTGGSAYKA GSGQETDGID LEVAGALTPN WNVYAGYTYL HFRRVDSDGR SDPSHLFKAS
TTYRLSGPLD RLTLGAGVTA QTNIRAISSP AGQPTNGVSN GATDVNWSGY AIWNAMAKYQ
LSDNTSVSLN ANNLFDKHYY SQYGFYAGAI YGDPRNLSLT VSTAF
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