| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0249 |
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| Symbol | |
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| ID | 5193555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 291866 |
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| End bp | 293206 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640584694 |
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| Product | outer membrane porin |
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| Protein accession | YP_001265607 |
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| Protein GI | 148545505 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00208088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.123914 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAAGT CCAGCCTGGC TCTGGCCGTG GCACTGGGGG TTCTCGCCCA ACAAGCAGGC
GCTGCCGGTT TCGTTGAGGA CAGCAAACTG TCGCTCAGCT CGCGCACCAT GTACTTCAAC
AACGACAACC GTGAAGATCA CGCAAGACCT GGTGCGGAGC GCCCGGATCA GCGTGAGTCG
GGCCAGGGCT TCAAGCTCGA CTACATCTCG GGCTTTACCC AAGGCACCGT AGGCTTCGGT
GTTGATGCCC AAGCGCTGTG GGGTATTCAC CTGGATGGTG GCGAGGGTTA CCACAAGTCC
GGCTTCTTCC CGGATGACGG CAAAGGTTCT GCAGCCCAGT GGGCTCGTTT CGGTGCCAAT
GCCAAGGCGC GCTTCTCCAA GACCGAAGCG CATTTCGGTA GCGCGCTCGC ACCGAACCTG
CCGATCCTGG TTTCCAACGA TGGTCGTCTG CTGCCACAAA CCTTCGAGGG TGGCACCATC
CAGTCGAAGG AAATCGATAA CCTGACCATC AACGCGGGTC AGCTGACCCA CGCCATGGGC
CGTGCTTCGA GCAACCGTAC CGGTCTGTCT GTCGCCGGTT CCAATGCCGA GAGCAACAAG
TTCCGCTATG GTGGCCTGGA CTACAAGCTC ACTCCAGACC TGACCCTGCA GTACTACTAC
TCGAACCTGG AAGACTTCTA CAAGCAGCAC TTCCTGGGCG CGACCCACGT GTTCAAGATC
GCTGACGACC AGTCGTTCAA GACCGACCTG CGCTACTTCG ACAGCAGCAG CGACGGCAAG
AATGGCAACG ACAGCGCTTA CAACTTCAAC AACAACGGTG GCTACGCCAA AAACACCGGC
GAGATCGACA ACAAGACCTG GTCCGCCATG TTCACCTATA CCTTGGGTGG CCACGCGCTG
ATGCTCGGTC ACCAGCAAGT GGGTGACGAC GGTGGCTTCG TATGGTTGAA CCAGGGCAGC
CTGAGCAACG ACAGCGGCAC CTCGGAAGGT GCTGGCGGCT CCAGCTTCTA CCTGTTCACC
GACAGCATGA TCAACCAGTT CGCCCGTGCT GGTGAAAACA CCACCTTCGG TCAGTACTCC
TATGACTTCG CGGCGCTGGG TGTGCCAGGC CTGAAGGCAT CGGTTGCTTA CCTGCGTGGT
GACGATATCC GCAACAAGTC GGGCAGCGGT ACCTACAATG AATGGGAACG CGATGCGCGC
ATCGACTACA CCCTCCAGGA AGGTGCCCTC AAAGGCTTGG GCTTCAGCCT GCGCCAAGGC
GTGTACCGTG GTGCCGGTGA GAGCAGTGCC GACCAGGATC AGGCTCGCTT CATCGTGAAC
TACACTTACA GCTTCCTGTA A
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| Protein sequence | MYKSSLALAV ALGVLAQQAG AAGFVEDSKL SLSSRTMYFN NDNREDHARP GAERPDQRES
GQGFKLDYIS GFTQGTVGFG VDAQALWGIH LDGGEGYHKS GFFPDDGKGS AAQWARFGAN
AKARFSKTEA HFGSALAPNL PILVSNDGRL LPQTFEGGTI QSKEIDNLTI NAGQLTHAMG
RASSNRTGLS VAGSNAESNK FRYGGLDYKL TPDLTLQYYY SNLEDFYKQH FLGATHVFKI
ADDQSFKTDL RYFDSSSDGK NGNDSAYNFN NNGGYAKNTG EIDNKTWSAM FTYTLGGHAL
MLGHQQVGDD GGFVWLNQGS LSNDSGTSEG AGGSSFYLFT DSMINQFARA GENTTFGQYS
YDFAALGVPG LKASVAYLRG DDIRNKSGSG TYNEWERDAR IDYTLQEGAL KGLGFSLRQG
VYRGAGESSA DQDQARFIVN YTYSFL
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