| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0244 |
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| Symbol | |
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| ID | 5193315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 285729 |
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| End bp | 287732 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640584689 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001265602 |
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| Protein GI | 148545500 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.300044 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.585828 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCAC CGAACCCTTC CGCTGCCAAC GGCAAAATCC GCATGAACCC CCCGGTGTTC
TACTTTGCGG CGAGTTTCAT CCTCATCTTT GGCCTGGTAG TCATCTCCAA CCCGCAAGCC
GCAGGTGACT GGTTGCTGGC GGCGCAGAAC TGGGCGGCCA ACACGGTCGG CTGGTACTAC
ATGCTGGCGA TGACGCTGTA CCTGGTCTTC GTGGTGGTCA CCGCCTTGTC TGGCTATGGC
AAGATCAAAC TCGGTGCCGA CCACGACGAA CCCGAGTTCA GCTACCTGTC GTGGGCAGGC
ATGCTGTTCG CCGCCGGCAT CAGCATCACG CTGTTCTTCT TCTGTGTCTC CGAACCGCTG
ACCCACATGC TGCAACCGCC CCAAGGCGAA GCCGGCACGG TCGAGGCCGG GCGCCAGGCG
ATGCAGATCC TGTTCCTGCA CTGGGGCCTG CATGGCTGGG GGGTGTTCGC CTTCGTCGGC
ATGGCATTGG CCTATTTCGC CTACCGGCAT AACCTGCCGC TGGCCCTGCG TTCGGCGCTG
TACCCGCTGA TTGGCAAGCG CATCAACGGC CCGATCGGTT ATGCGGTGGA TGGCTTCGGC
ATCATCGCCA CGGTGTTCGG CCTGGGCGCC GACATGGGCT TTGGGGTGCT GCATCTGAAC
GCCGGTCTGG ACTACCTGTT CGGCATCAGC CACAGCCAGT GGGTGCAGGT GATCCTCATC
ACCCTGATGA TGGGCGCGGC TGTGGCCGTA GCCGTGGCCG GGGTGGAGAA GGGGGTGCGG
GTGATGAGCG ACATCAACCT GTTCCTGGCC TGTGCGCTGC TGCTGTTCGT GCTGTTCGCC
GGGCCTACCC AGCACCTGTT CAACACGCTG ATCCAGAACC TGGGCGACTA CCTGGGTGCG
TTGCCGCGCA AGAGCTTCGA CGTGTATGCC TATGGTGAAA ACCGCGGCTG GCTGGGCGGC
TGGACCGTGT TCTACTGGGC CTGGTGGATT GCCTGGGCGC CGTTCGTGGG CCTGTTCATC
GCCCGCATCT CCCGTGGCCG TACCATCCGC GAGTTCGTCT TTGGCGTGCT GCTGATTCCG
CTGGGCTTCA CCCTGGCGTG GATGTCGATC TTCGGCAACA GCGCCTTGGA CCAGGTGATC
AACCACGGCA TGACCGCACT GGGCCAGTCG GCGCTGGATA ACCCGTCGAT GAGCCTGTAC
CTGCTGCTGG AAACCTACCC CTGGAGCAAG GCAGTCATCG CCACCACGGT GTTCATCAGC
TTCGTGTTCT TCGTCACCTC GGCCGACTCG GGCACCGTGG TGCTGTCGAC CTTGTCGGCC
AAGGGCGGTG ACGCTGATGA AGATGGGCCG AACTGGCTGC GTATCTTTTG GGGGGCGATG
ACTGCACTGA TCACCAGTGC GCTGTTGTTC GCTGGCAGCA TTGATTCGCT GAAGTCGGCA
GTGGTGCTGA CGTCGCTGCC GTTCTCGCTC ATTCTGCTGT GCATGATGTG GGGGCTGCAC
AAGGCGTTCT ACCTGGAGTC GCAGCGGCAG ATCGCGCAGA TGCACTCGCT GGCCCCGTTC
GCCCAGTCGC GTCGCGGCCG TGGCGGCTGG CGCCAGCGCC TGAGCCAGGC GGTGCACTTC
CCGTCACGTG ATGAGGTGTA CCGTTTCATG GATGATGTGG TGCGCCCGGC GATTGCCGAT
GTGCGTGAAG TGTTCGAGCA GAAAGGCCTG GTGCTGATTA CCCAGGACGA CCCTAGCCAT
GACAACGTCA GCCTGAAGAT TGGCCATGGC GAGGAACAGC CGTTCATTTA CCAAGTGCAG
ATGCGTGGCT ATTTCACACC ATCGTTCGCC TTGGGGGGGC TGGGTACGCA GGAGTTGAAG
AACCGCCGCT ATTACCGGGC GGAGGTGCAC CTGAGCGAAG GCAGCCAGAA CTATGACCTG
GTGGGCTACA GCAAGGAGCA GATCATCAAC GACATCCTCG ACCAGTACGA GCGGCACATG
CAGTACCTGC ACCTGGTTCG CTGA
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| Protein sequence | MSAPNPSAAN GKIRMNPPVF YFAASFILIF GLVVISNPQA AGDWLLAAQN WAANTVGWYY
MLAMTLYLVF VVVTALSGYG KIKLGADHDE PEFSYLSWAG MLFAAGISIT LFFFCVSEPL
THMLQPPQGE AGTVEAGRQA MQILFLHWGL HGWGVFAFVG MALAYFAYRH NLPLALRSAL
YPLIGKRING PIGYAVDGFG IIATVFGLGA DMGFGVLHLN AGLDYLFGIS HSQWVQVILI
TLMMGAAVAV AVAGVEKGVR VMSDINLFLA CALLLFVLFA GPTQHLFNTL IQNLGDYLGA
LPRKSFDVYA YGENRGWLGG WTVFYWAWWI AWAPFVGLFI ARISRGRTIR EFVFGVLLIP
LGFTLAWMSI FGNSALDQVI NHGMTALGQS ALDNPSMSLY LLLETYPWSK AVIATTVFIS
FVFFVTSADS GTVVLSTLSA KGGDADEDGP NWLRIFWGAM TALITSALLF AGSIDSLKSA
VVLTSLPFSL ILLCMMWGLH KAFYLESQRQ IAQMHSLAPF AQSRRGRGGW RQRLSQAVHF
PSRDEVYRFM DDVVRPAIAD VREVFEQKGL VLITQDDPSH DNVSLKIGHG EEQPFIYQVQ
MRGYFTPSFA LGGLGTQELK NRRYYRAEVH LSEGSQNYDL VGYSKEQIIN DILDQYERHM
QYLHLVR
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