| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0233 |
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| Symbol | |
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| ID | 5194198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 273270 |
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| End bp | 275165 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640584678 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001265591 |
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| Protein GI | 148545489 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.992209 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGTTT CCGTTCGCGA CGCCTTGCGC ATGGCTGCGC TGTATGTGGT GCTCTCGATC
CTCTGGCTTG CGCTGGCGGA GGTGATGCTG CACAGCATGA CTGACGACCC CTTGGCATTG
ACTGTGGGGC GGCAGATCAA CGTGGTGGTC TGGGTGCTGC TCAGTGCCGT GCTGATCTAC
GTGTCGCGTG TGCGCCTGCT CAATTTCATC GGCCATGGCG CGCGTTTGCG TTGCGAAGAC
CGTGAACGGC TGCGCATGGC TGCCGCGGTG TTCGACAGTA CCCTCGAGGG TGTGCTGGTG
ACCGACCGCC AAGGCCTGAT CGTGCACGTC AATCGTGCCT TCATGCGCAT CACCGGCTAC
CAGCAGGATG AGGTCATCGG CCAGCGCCCG AGCAAGTTCA AGTCGGGCCG CCATGGCCTG
GCCTTCTACC AGGAAATTTT TGCCACCCTG GCCGAGAAGG GCGAGTGGAG TGGTGAAATC
TGGAACCGGC GCAAAAGCGG GGAAATCTAC CCGCAGTGGC AGACCATTTG CGCCATTCGT
GATGACGAAG GTGAGCTCAG CCATTACGTG GCGGTGTTCA GTGACATCAG CGCCATCAAG
CATTCGGAAC AAGAGCTTGC CTACCTCGCC CACCACGACC CGCTGACCGG CCTGCCCAAC
CGCCTGCTGT TTACCGACCG GGTGGAGCAG GCATTGGCGG TGGCGCAGGC CAACAAGCGC
GGTTGCGCCC TGTTGCTGCT GGACCTGGAT CATTTCCAGA GCATAAACGA CGGCCTGGGC
CATACCATTG GCGACCAGTT GCTGAAGCTG GTAGGCGAGC GTCTGGGAGA GGTGTTGGGT
AACGGCATGA CCCTGGCGCG TCTGGGCGGC GACGAGTTCG GCGTGCTGGC CGAGAACTGC
CAGCAGGTTG GCCAGGCGGG CAAGCTGGCG CAATGCATCA TCGAGCGCAT GCGTGAGCCG
TTTCAGTTCG AGGGCAATCG TCTGTTCATC AGCGCCAGCG TCGGAATCAG CCTGTTCCCC
AGCGATGCCT TGAGTGCCGA GCAGTTGCTG CGCAATGCCG ACTCGGCGTT GTACAAGGCC
AAAAGCAACG GTCGGGCCTG TTATGCGCTG TACACCGAAG AGCTGACCGC CCACGCCCAG
CATCGGGTCG AGACCGCCGC CGAATTGCGT CGGGCCCTGG AGCAGGATGA ACTGCGGGTG
TACTTTCAGC CGGTACACGA CTTGGCGACG GGCCGGCAGG TCGGGGTCGA GGCGTTGGTG
CGATGGCAGC ACCCCGGGCG CGGCCTGGTA CCGCCGAGCG AGTTCATCCC GATTGCCGAA
CGCACCGGCC TGATTGCCGA GATCGATACC TGGGTGCTGC AACAGGCCTG TCGGCAAATG
GTGCAGTGGC AGGCTGAAGG CCGGCAGCTG GCATTTGTTG GGGTGAACAT CTCCAGTCGC
CTGTTTGGCC AGCATGAGCT GTATCGGCAG ATAGCCGAAG TGCTGCATGA CACCGGCCTG
GCCCCGGCCT TGCTGGAGCT GGAAGTGACC GAAAGCGCGG TGATGGAAGA CCCTGAGGTG
GCGCTGGAGC AACTGCACCG CTTGCGCGAA CTGGGGGTGA CCCTGGCCAT CGACGACTTT
GGCACCGGGT ATTCGTCACT GCTGCGGCTC AAACGTTTGC CGGTGCAGAA ATTGAAAATC
GACCAAGGGT TTGTGGCTGG GTTGCCAGTG GATGAAGACG ACATCGCTAT TGTGCGGGTG
ATCATCGCCT TGGCCCGTAG CATGGGTATG CAGGTGCATG CCGAGGGCAT CGAGCAGACG
GAACAGGCCA GCTTCCTGTT GCAGGAGGAA TGCCAGTTGG GGCAAGGGTA CTGGTTCGGG
CGGCCAGTGC CGGCTGAGGA TCTTCGCTGG GATTGA
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| Protein sequence | MSVSVRDALR MAALYVVLSI LWLALAEVML HSMTDDPLAL TVGRQINVVV WVLLSAVLIY
VSRVRLLNFI GHGARLRCED RERLRMAAAV FDSTLEGVLV TDRQGLIVHV NRAFMRITGY
QQDEVIGQRP SKFKSGRHGL AFYQEIFATL AEKGEWSGEI WNRRKSGEIY PQWQTICAIR
DDEGELSHYV AVFSDISAIK HSEQELAYLA HHDPLTGLPN RLLFTDRVEQ ALAVAQANKR
GCALLLLDLD HFQSINDGLG HTIGDQLLKL VGERLGEVLG NGMTLARLGG DEFGVLAENC
QQVGQAGKLA QCIIERMREP FQFEGNRLFI SASVGISLFP SDALSAEQLL RNADSALYKA
KSNGRACYAL YTEELTAHAQ HRVETAAELR RALEQDELRV YFQPVHDLAT GRQVGVEALV
RWQHPGRGLV PPSEFIPIAE RTGLIAEIDT WVLQQACRQM VQWQAEGRQL AFVGVNISSR
LFGQHELYRQ IAEVLHDTGL APALLELEVT ESAVMEDPEV ALEQLHRLRE LGVTLAIDDF
GTGYSSLLRL KRLPVQKLKI DQGFVAGLPV DEDDIAIVRV IIALARSMGM QVHAEGIEQT
EQASFLLQEE CQLGQGYWFG RPVPAEDLRW D
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