Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0208 |
Symbol | hemC |
ID | 5193240 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 248435 |
End bp | 249376 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640584653 |
Product | porphobilinogen deaminase |
Protein accession | YP_001265567 |
Protein GI | 148545465 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACTC GCGAAATCCG CATTGCCACC CGTAAAAGTG CTTTGGCCCT GTGGCAGGCC GAATACGTCA AGGCCCGCCT CGAGCAGGCC CACACCGGTC TGCAGGTGAC CTTGGTGCCC ATGGTCAGCC GCGGTGACAA GTTGCTCGAC GCGCCGCTGG CAAAAATTGG CGGCAAGGGG CTGTTCGTCA AGGAACTGGA AACCGCGCTG TTGGACAACG AAGCCGACAT CGCCGTGCAC TCGATGAAAG ACGTGCCCAT GGACTTCCCC GAGGGCCTGG GCCTGTACTG CATCTGCGAG CGTGAAGACC CGCGTGATGC CTTCGTTTCC AATACCTTTG ACAGCCTCGA AACGCTGCCC GCCGGCAGTA TCGTCGGTAC CTCAAGCCTG CGCCGTCAGG CCCAGTTACT GGCGCGCCGC CCAGACCTGC AAATCCGCTT TCTGCGCGGC AACGTCAACA CCCGCCTGGC GAAGCTGGAT GCCGGCGAGT ACGACGCCAT CATCCTCGCC GCGGCGGGCC TGATCCGTCT GGGCTTCGAG GACCGCATCA CCTCCACCAT CAGCGTCGAT GACAGCCTGC CGGCAGGTGG TCAGGGCGCG GTGGGCATCG AGTGCCGCAG TGCCGACGTT GAGATTCATG CACTGCTGGC GCCACTGCAC CATGTCGACA CCGCTGACCG GGTGATCGCC GAGCGCGCGC TGAACAAACG CCTGAATGGT GGCTGCCAAG TGCCGATCGC CTGCTACGCG GTCCTTGAAG GTGACCAGCT GTGGCTGCGC GGCCTGGTCG GCCAGCCTAG CGGCGGGACC TTGCTGGTGG CCGATGCCCG TGCACCCCGT GCTGCTGCCG AGGCCCTGGG CGTACAGGTG GCCGAAGACC TGCTGGGGCA GGGCGCCGAG GCCATTCTGA AGGAAGTCTA CGGCGAGGCC GGTCACCCAT GA
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Protein sequence | MSTREIRIAT RKSALALWQA EYVKARLEQA HTGLQVTLVP MVSRGDKLLD APLAKIGGKG LFVKELETAL LDNEADIAVH SMKDVPMDFP EGLGLYCICE REDPRDAFVS NTFDSLETLP AGSIVGTSSL RRQAQLLARR PDLQIRFLRG NVNTRLAKLD AGEYDAIILA AAGLIRLGFE DRITSTISVD DSLPAGGQGA VGIECRSADV EIHALLAPLH HVDTADRVIA ERALNKRLNG GCQVPIACYA VLEGDQLWLR GLVGQPSGGT LLVADARAPR AAAEALGVQV AEDLLGQGAE AILKEVYGEA GHP
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