| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0185 |
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| Symbol | |
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| ID | 5192187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 198302 |
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| End bp | 199678 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640584630 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001265544 |
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| Protein GI | 148545442 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.116801 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTGCATA AGCTGGATAT GGGGCAGTTC AAGGACGGCC TGCGGCGCTA TTTCAAAGGC
AGCGACTCGC TTGGCGGCCA GCCGCTGCCC GAGGTAAACA AAGCCCTGAT CGAAGATGCA
CCGCGGGTGG TGCGGCTGAC CATCTGGGGC GTGATCCTGT TCTTCGTGTT CTTGATTGTA
TGGGCCAGCG TTGCGCCCAT CGACGAAGTT ACGCGGGGTG AAGGCAAGGC CATTCCCTCT
TCCAAGGTAC AGAAGATCCA GAACCTGGAG GGCGGCATCG TCGCCGAAAT CTTCGCCAAG
GAGGGGCAGA TCGTCGAAGT GGGCCAGCCA TTGCTGCGCC TGGATGAAAC CCGCTTCGCC
TCCAACGTTG GTGAAACCGA GGCTGACCGC CTGGCCATGG CCCTGCGGGT CGAACGTTTG
AGTGCCGAGG TACAGGACAG CCCGCTGATA ATCGACGAAA AGCTGCGTAA AGCCGCGCCA
AACCAGGCGG CCAGTGAGGA GTCGCTGTAC CAGAGCCGGC GCCAGCAACT GCAGGACGAA
ATTGGCGGCC TGCAACAGCA GTTGGTCCAA CGCCAGCAGG AACTGCGCGA ATACAGCTCC
AAGCGCACCC AGTACGCCAA CAGCCTTGAG CTGCTGCGCA AGGAAATCAG TATGTCCGAA
CCGCTGGTGG CAACCGGCGC GATTTCCCAG GTTGAAGTGC TGCGCCTGCG CCGTGCTGAA
GTGGAAAACC GCGGTCAGCT GGACTCCACT GCGCTTGCGA TCCCGCGCGC AGAGGCGGCC
ATCCGCGAGG TGCAAAGCAA GATCGAAGAG ACGCGTGGCA AGTTCCGAAG TGAAGCGCTG
ACCCAGCTGA ACGAGGCACG CACCGAACTG AACAAGGCTA CCGCCACCAG CAAGGCGCTG
GACGACCGGG TGCACCGCAC ACTTGTCACT TCGCCAGTAC GCGGTATCGT CAAGCAACTG
CTGGTGAACA CCATTGGCGG GGTAATCCAG CCAGGCAGCG ATATCATCGA AGTCGTGCCA
TTGGACGACA CGCTGGTCAT CGAGGCAAAG ATCCTGCCCA AAGACATCGC CTTCCTGCAC
CCTGGCCAGG AAGCGACGGT CAAGTTCACC GCGTATGACT ACACCATCTA CGGTGGGCTC
AAGGCCAAGC TGGAGCAGAT TGGCGCCGAC ACCATTACCG ATGAAGACAA GAAGACTACG
TATTACCTGA TCAAGCTGCG CACCGATCGC AGTCACCTAG GGACCGACGA GAAGCCACTG
CTGATCATTC CGGGGATGGT GGCGACGGTG GATATCATGA CAGGCAAGAA AACCATCATG
AGCTACCTGC TCAAGCCGAT CATGAAGGCG CGCTCGGAAG CGCTGCGCGA GCGGTGA
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| Protein sequence | MLHKLDMGQF KDGLRRYFKG SDSLGGQPLP EVNKALIEDA PRVVRLTIWG VILFFVFLIV
WASVAPIDEV TRGEGKAIPS SKVQKIQNLE GGIVAEIFAK EGQIVEVGQP LLRLDETRFA
SNVGETEADR LAMALRVERL SAEVQDSPLI IDEKLRKAAP NQAASEESLY QSRRQQLQDE
IGGLQQQLVQ RQQELREYSS KRTQYANSLE LLRKEISMSE PLVATGAISQ VEVLRLRRAE
VENRGQLDST ALAIPRAEAA IREVQSKIEE TRGKFRSEAL TQLNEARTEL NKATATSKAL
DDRVHRTLVT SPVRGIVKQL LVNTIGGVIQ PGSDIIEVVP LDDTLVIEAK ILPKDIAFLH
PGQEATVKFT AYDYTIYGGL KAKLEQIGAD TITDEDKKTT YYLIKLRTDR SHLGTDEKPL
LIIPGMVATV DIMTGKKTIM SYLLKPIMKA RSEALRER
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