| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0184 |
|---|
| Symbol | |
|---|
| ID | 5192186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 196200 |
|---|
| End bp | 198146 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640584629 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001265543 |
|---|
| Protein GI | 148545441 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.181368 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.144967 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTGT TCAAACAATT GCTGTTGGCC ATTTGCCTGT TCCTGGTGGT CGCCTTCAGT
GGCAGTTTCA TGGTCAGCCT GGAAAGCTCG CGCAGCCAAT ACGTCAACCA GCTGCGCTCG
CACGCCCAGG ATGCGGCCAC CGCGCTGGCG CTTTCGCTGA CGCCGAATAT CGACGACCCA
GCGATGGTCG AGCTGATGGT CAGCTCGATT TTCGACAGTG GTTACTATGC AAGCATCAAG
GTCGTCGACC TGGGTTCCAA TGCCGTGCTG GTGGAGCGTC ATGCCGAGCC AGACCCTGGC
GGTGTGCCGC TTTGGTTCGT GCGCCTGATC GGCCTTGAGG CCGCCGGCGG CGATGCAATC
GTCAGTCGTG GCTGGCAGCA GGCCGCGCGC GTTGAAGTGA TCAGCCACCC GATGTTCGCC
ATTGCCAAGC TTTGGCAAAG TGCCTTGGGC AGCCTGGGTT GGTTGCTGTT GTGCGGTGCG
GCCAGTGCCG TGCTCGGTGC TTTGCTGTTG CGTCGCCAGT TGAGGCCGCT GGACTACATG
GTCGAGCAAT CCCACGCTAT TGCTCGCCGC GAATTTCTCA GCCTGCCAGA GTTGCCACGC
ACGCCGGAGC TACGCCGCGT AGTGCAAGCG ATGAACCAGA TGGTCGAGAA ACTCAAAGCC
CTGTTCACCG AGCAGGCCGA GCGCAGTGAG CGGCTGCGTG CGGAGTCCTA CCAGGACAGC
CTGACCGGGC TGTCGAACCG CCGCTATTTT GAAATGCAGC TGAACAATCG GGTAAGCAAC
CTGGAAGACG CGCGCGCCGG CTACCTGCTG TTGCTGCGGG TTCAGGGCCT GGCTGGCCTG
AACGCCCGCC TTGGCGGCCA GCGTACCGAC CAGTTGCTGC AAGCGGTAGG TGAACAGCTG
CGTCGTACTT GTGCCAGCTA CCCGGAAACC AACGACCTCA TTTCCCGCAG CCGCGGCGGT
GAATTTGCAG TGCTGGCACC GGGCATGGTG CATGAGGAGG CCGTACACCT TGCCCAGGCC
CTGGAGGCAA CGTTGCAGAG CCTGCACGAA ACGGGGGCCA GTGATATAGA CCCGGTGGCT
TGTATAGGCC TGGCACCATT CAGCCCTGGT GATTCACCAC AGGCATTACT GAAGCTCGCC
GACGAGGCTC TGGCCCGCGC TGAGAACCAG CCAACGCCGG GCTGGGTATG CCTTGAGCAA
GGTGTTGCTG CGGTTGCCGC AGATAGCCAG CATGCCTGGC ACGAACGGCT CGACCAGGCG
TTTATCAATG GGCATTTCGA GTTGTTCTTC CAGCCAGTGA TGGAGTGCGC TTCCTCGCAA
CGGGTACTGC ACCACAAAGT TATTTCGCGT TTGCGCGATG GCCAGGGCGA GGCCTTGCCG
GCGGGCCGCT TCCTGCCTTG GCTGGAGCGC TTCGGCTGGA TGCCGCGGCT GGATGTGCTG
GTGCTGGAGA AAGTGTTGGC GCACCTGCGA GGGCATGACC AGGTGCTGGC GTTGAACCTG
TCCGCCGCCA CCCTGGCCGA CCCCAAGGCC CTTCAACGCA TTTTCGAGCT GCTGGGCCAG
AATGCGGCGC TCGGCCCGCG GCTGGTTTTT GAAATTGGCG AGGAGCAGTT GCCTGAGCAG
GCAGCATTGG AGCAACTCAC CCGGCGCCTG CATGGGCTAG GTTTCGGGTT GGCTTTGCAA
CGCTTCGGTG GGCGCTTCAG CATGATTGGC AACCTGGCGC ACTTGGGCCT GGCGTACCTG
AAGATTGACG GCAGTTACAT CCGCAACATC GATCATGAGC AGCACAAGCG GCTGTTCATC
GAAGCGATCC AGCGTGCGGC GCATAGCATC GACCTGCCGC TGATTGCTGA GCGAGTCGAG
ACGGAAGGGG AGCGGTTGGT GTTGCTGGAG ATGGGAGTAG GCGGGATTCA GGGGCAACTG
GTGGGTGAGC CTGCGCCTTG GCGCTGA
|
|---|
| Protein sequence | MSLFKQLLLA ICLFLVVAFS GSFMVSLESS RSQYVNQLRS HAQDAATALA LSLTPNIDDP
AMVELMVSSI FDSGYYASIK VVDLGSNAVL VERHAEPDPG GVPLWFVRLI GLEAAGGDAI
VSRGWQQAAR VEVISHPMFA IAKLWQSALG SLGWLLLCGA ASAVLGALLL RRQLRPLDYM
VEQSHAIARR EFLSLPELPR TPELRRVVQA MNQMVEKLKA LFTEQAERSE RLRAESYQDS
LTGLSNRRYF EMQLNNRVSN LEDARAGYLL LLRVQGLAGL NARLGGQRTD QLLQAVGEQL
RRTCASYPET NDLISRSRGG EFAVLAPGMV HEEAVHLAQA LEATLQSLHE TGASDIDPVA
CIGLAPFSPG DSPQALLKLA DEALARAENQ PTPGWVCLEQ GVAAVAADSQ HAWHERLDQA
FINGHFELFF QPVMECASSQ RVLHHKVISR LRDGQGEALP AGRFLPWLER FGWMPRLDVL
VLEKVLAHLR GHDQVLALNL SAATLADPKA LQRIFELLGQ NAALGPRLVF EIGEEQLPEQ
AALEQLTRRL HGLGFGLALQ RFGGRFSMIG NLAHLGLAYL KIDGSYIRNI DHEQHKRLFI
EAIQRAAHSI DLPLIAERVE TEGERLVLLE MGVGGIQGQL VGEPAPWR
|
|---|
| |