| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0146 |
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| Symbol | |
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| ID | 5194540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 147729 |
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| End bp | 149666 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640584587 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001265505 |
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| Protein GI | 148545403 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.369767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAAG ACGCTGAGCG CTGGAAAGAA AAATACCTTA AAAGCATCGA GCAGCAAGAA
AAGCTCGAAC GCCGTTGGGA TGCCCGTCTT GACCTGCTGC GTCGAGGCCT GGTGCGCAGC
ACCCTGGCTG CTGAAGGCAG TGACAAGGTG GTAGACGAGT GCATGAAGGA AATGCGCGAT
GTCATTCGCA GCGACAACAT GGACGCCGGC CTCGCCGGCT TGATTCCGCG CCTTGAGAAA
GCGGTACTGG ATTCCGAACA GCGTCGCGAA ACCCGCATGA ACCAAGTCAG CGATGCGCTG
ACCGCACTGG TTGGCCAACT GCAAGGCCTG CCCCTGCCCA GTGATATCTC GCGGCCATTG
AAAAAACTGG CGAAGAAGCT CGACGGCGGG GTTGCCCAGT CACGCGAGCT GCCGCCGCTG
TTGGGCGAGT TGAGCGGCTT GCAGGGGCGC GCGCTGTCGG CCCTTGGCAA GCCGGGTGAA
GAAACCCGAC CCGGGTTTCT GCAGCGGTTG TTCGGAAGCC GCGAGGAAGA TGCACAGGCA
GGAGCAGAGC TTGAGCCGGT GGCGTTGCCT GCTGCCGAGG TTGTGCCCCA GGCAGCCGGC
AGTGCCGAGC CCTCGCGGCC CGATGACGTC GATGCGCTAC AACCGTTGCC GGCCCCTGCT
GCTCCGACTG CCGAGGTGGC CGAAGCGCCC GAGCTTGAGC TGGAGGCATT TGGCCCGGCG
CTGATCGAAA CGGCCGAAAT GGCGCCAGCC CCGTTGCCAA GGGACAAGGC GCCATTGCCG
GAAGCTGCAG TTTCCGTCAG CGAGCCGTTG GCTGAGGCAG AACCCTTACA AGTCCTTGAA
GAAACCTTTG GTGAAGACGG CCCCTATGCT CTGCCCTACG CAGTGGAGCC GCCTTACAGC
CAGGTTGCCG CGCACATCGA GCAGACCCTG ATCGGTCTGC TCGATGACCT TAGCCTGCCC
GAGCGCCACA AGGCTCAGGC GTTGGAAATG CGCGAGCGGG TTGCGCGCGG CTTGAACTGG
TATGAGCTGA TCCCGGTGCT GGATGACTTG GCAGTCCTCA TGCTGGCGAT CACCGACAGC
GGCCAGCACG AATTCGAAAC CTACCTGCAG CAGCTCAATG AACGCCTGGA AGGTTTCCAA
AGCCACCTGC ACGAGGCCAG CGCCGGTCAC GCGGACAACA GCACCGCTGC CCGCGAGCTG
GATAGCCAAC TGCGTGAGCA CGTCGACGGC CTGCAGAGCA GCGTGCAAGG TGCCGCCGAT
GTAGACAGCC TCAAGCACAT TCTGGAAAAC CGCCTGGAAG GCTTGCTGCT GACCATGGAC
GAGCACAAGC ACGAGCGTGA TCGCCGCGAG CAGGAACTGG CCGGTCGCCT GCAAGGCTTG
TCGGAGCGGG TGGCGAGCAT GGAGCATGAG GCGCTTGGCT ATCGCGAGCA CCTGGAAGAA
CAGCGCCAGA AAGCGCTGCT GGACCCGCTC ACCGGCCTGC CCAACCGTGC GGCCTGGAGC
GAGCAAGTCG AACGCGAAAT GCTTGACTGG CAGGAAAACG GCGGTCATCT GGCGATGGCG
ATTCTTGACC TGGACCATTT CAAACGCATC AACGACAACT ATGGTCATCT GGCTGGGGAC
AAGGTCCTCA AGATCGTGGC CGACCAGTTG CGCAAGCGCC TGCGGGGCCG GGATTTCATC
GCCCGTTTTG GCGGCGAGGA ATTCGTCTTG CTGTTGCCGC AGACTACGCC CGCAGTCGCT
GCGCAAATGG CCGAGGTGTT GCGCGCCACA GTCGAAGCCT GCCCATTCCA CTTCAAGGGT
GAACGGGTAG TGATCACCAC CTCCATCGGC CTGGGTGCAT TCCGTTCTGG CGAACGCAGC
GACCAGGTGC TCAAACGAGC CGATGCAGCG CTGTACCGGG CAAAGGAGCA GGGGCGTAAT
CGCGTCGAGC ATGGTTAG
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| Protein sequence | MTEDAERWKE KYLKSIEQQE KLERRWDARL DLLRRGLVRS TLAAEGSDKV VDECMKEMRD
VIRSDNMDAG LAGLIPRLEK AVLDSEQRRE TRMNQVSDAL TALVGQLQGL PLPSDISRPL
KKLAKKLDGG VAQSRELPPL LGELSGLQGR ALSALGKPGE ETRPGFLQRL FGSREEDAQA
GAELEPVALP AAEVVPQAAG SAEPSRPDDV DALQPLPAPA APTAEVAEAP ELELEAFGPA
LIETAEMAPA PLPRDKAPLP EAAVSVSEPL AEAEPLQVLE ETFGEDGPYA LPYAVEPPYS
QVAAHIEQTL IGLLDDLSLP ERHKAQALEM RERVARGLNW YELIPVLDDL AVLMLAITDS
GQHEFETYLQ QLNERLEGFQ SHLHEASAGH ADNSTAAREL DSQLREHVDG LQSSVQGAAD
VDSLKHILEN RLEGLLLTMD EHKHERDRRE QELAGRLQGL SERVASMEHE ALGYREHLEE
QRQKALLDPL TGLPNRAAWS EQVEREMLDW QENGGHLAMA ILDLDHFKRI NDNYGHLAGD
KVLKIVADQL RKRLRGRDFI ARFGGEEFVL LLPQTTPAVA AQMAEVLRAT VEACPFHFKG
ERVVITTSIG LGAFRSGERS DQVLKRADAA LYRAKEQGRN RVEHG
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