Gene Pput_0120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0120 
Symbol 
ID5192063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp123479 
End bp125068 
Gene Length1590 bp 
Protein Length529 aa 
Translation table11 
GC content59% 
IMG OID640584561 
Productcytochrome c oxidase, subunit I 
Protein accessionYP_001265479 
Protein GI148545377 
COG category[C] Energy production and conversion 
COG ID[COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 
TIGRFAM ID[TIGR02891] cytochrome c oxidase, subunit I 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCAG TGATCGACGA CCACGCCCAC GGCCACGACC ATGCGCACGG CCCGGCCAAG 
GGCCTGATGC GCTGGGTGCT GACCACCAAT CATAAAGACA TCGGCACGAT GTACCTGTGG
TTCAGTTTCA TCATGTTCCT GCTCGGTGGC TCGTTTGCCA TGGTGATCCG CGCTGAGCTG
TTCCAGCCGG GTTTGCAGAT CGTGGAGCCG GCGTTCTTCA ACCAGATGAC CACCATGCAT
GGCCTGATCA TGGTGTTTGG CGCGGTGATG CCGGCCTTCG TCGGCCTGGC CAACTGGATG
ATTCCGCTGA TGATCGGCGC GCCCGACATG GCACTGCCAC GGATGAACAA CTTCAGCTTC
TGGCTGCTGC CGGCGGCCTT CCTGCTGCTG GTATCGACGC TGTTCAGCCC GGGCGGAGGG
CCGAACTTTG GCTGGACGTT CTACGCGCCG CTTTCCACCA CCTATGCGCC AGCCAGCGTC
ACCTTCTTCA TCTTCGCCAT CCACCTGATG GGTATCAGCT CGATCATGGG GGCGATCAAC
GTGATTGCCA CCATCCTCAA CCTGCGTGCC CCCGGCATGA CGCTGATGAA AATGCCGCTG
TTCGTCTGGA CCTGGCTGAT TACCGCGTTC CTGCTGATTG CGGTGATGCC AGTACTGGCC
GGCGTGGTAA CCATGATGCT GATGGATATC CACTTCGGTA CCAGCTTTTT CAGTGCCGCA
GGTGGCGGTG ACCCGGTGCT GTTCCAGCAT GTGTTCTGGT TCTTCGGTCA CCCTGAGGTG
TACATCATGA TCCTGCCCGC CTTCGGTGCG GTCAGCTCGA TCATCCCGGC GTTCTCGCGC
AAGCCGCTGT TCGGTTATAC CTCGATGGTG TATGCCACCG GCGCCATTGC CTTCCTGTCA
TTCATCGTCT GGGCCCACCA TATGTTCGTG GTCGGCATCC CGGTGGTCGG CGAGTTGTTC
TTCATGTACG CCACCATGCT GATTGCCGTG CCCACCGGGG TGAAGGTATT CAACTGGGTC
AGCACCATGT GGGAAGGCTC GCTCACCTTC GAAACGCCGA TGCTGTTCGC CATCGCCTTT
GTCATCCTGT TCACCATCGG TGGCTTTTCC GGGCTGATGC TGGCGATTGC CCCGGCGGAC
TTCCAGTACC ACGACACTTA CTTCGTAGTG GCGCATTTCC ATTACGTACT GGTGCCTGGT
GCAATTTTCG GCATCTTTGC CTCGGCCTAC TACTGGCTGC CGAAATGGAC CGGCCACATG
TATGACGAAA CCCTCGGCAA ACTGCACTTC TGGCTGTCGT TCATCGGCAT GAACATGGCC
TTCTTCCCCA TGCACTTCGT AGGCTTGGCC GGCATGCCAC GGCGCATCCC CGACTACAAC
CTGCAGTTCG CCGATTTCAA CATGGTGTCG TCGATCGGCG CGTTCATGTT CGGCGCCACG
CAGATCTTCT TCCTGTTCAT TGTCATCAAG TGCATCCGCG GTGGCGCGCC GGCACCGGCC
AAACCCTGGG ATGGCGCCGA GGGCCTTGAG TGGTCGATAC CCTCGCCTGC GCCCTACCAC
ACCTTCCAGA CACCCCCGGA AGTGAAATAG
 
Protein sequence
MSAVIDDHAH GHDHAHGPAK GLMRWVLTTN HKDIGTMYLW FSFIMFLLGG SFAMVIRAEL 
FQPGLQIVEP AFFNQMTTMH GLIMVFGAVM PAFVGLANWM IPLMIGAPDM ALPRMNNFSF
WLLPAAFLLL VSTLFSPGGG PNFGWTFYAP LSTTYAPASV TFFIFAIHLM GISSIMGAIN
VIATILNLRA PGMTLMKMPL FVWTWLITAF LLIAVMPVLA GVVTMMLMDI HFGTSFFSAA
GGGDPVLFQH VFWFFGHPEV YIMILPAFGA VSSIIPAFSR KPLFGYTSMV YATGAIAFLS
FIVWAHHMFV VGIPVVGELF FMYATMLIAV PTGVKVFNWV STMWEGSLTF ETPMLFAIAF
VILFTIGGFS GLMLAIAPAD FQYHDTYFVV AHFHYVLVPG AIFGIFASAY YWLPKWTGHM
YDETLGKLHF WLSFIGMNMA FFPMHFVGLA GMPRRIPDYN LQFADFNMVS SIGAFMFGAT
QIFFLFIVIK CIRGGAPAPA KPWDGAEGLE WSIPSPAPYH TFQTPPEVK