| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0092 |
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| Symbol | |
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| ID | 5191233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 98458 |
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| End bp | 99381 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640584533 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_001265451 |
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| Protein GI | 148545349 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAAGT TCTCCGCCGC CGTGTTCGTC CTGGCCCTGA GCGCCACCAC GGCCCACGCC
GCAGACAGCG ATGCGCAATG CAGTACCGTG AAAATGGCCG ACCCCGGCTG GAGTGATATT
GCCTCGACCA ATGCCGTGGC ACGCCTGTTA CTGGAAAGCC TGGGTTACCA GGTGAAGATC
GACAGTCTGG CCGTACCGAT CATCTACGGC GGCCTCAAGG ACGGCCAGGT TGACGCCTTC
CTCGGCAACT GGATGCCGGC GCAGCAAGGC TTCCATGACA AGTTCATCGC CAACGGCGAT
GTGCAGCAGC TGTCGCGCAA CCTGGAGGGA ACCGAGTTCA CCCTCGCAGT GCCCGACTAT
GTGTGGAATG CCGGGGTGAA GGACTTCGCT GACCTGCAAA AACACGCCGG GCAGTTCGAC
AAAAAGCTGT ACGGAATCGG CTCCGGCGCC CCGGCCAACC TGTCACTCAA GAAAATCATC
GAAGAGAATG AATTCAACCT CGGCCAGTGG AAGCTGGTGG AGTCCAGCGA GCAGGCGATG
CTGGCCCAGG TCGACCGGGC GGTGAAGAAG CAGCAATTCA TCACCTTCCT TGGCTGGACC
CCGCACCCGA TGAACGTGAA ACTGAAAATG CATTACCTGA CCGGTGGTGA AAAATGGTTC
GGCAGCAAGG GCGAGGTATA CACGCTGACC CGCAAGGGTT ATCCACAAGC CTGCCCGAAT
GCGGCGAAGC TGCTAGGTAA CCTCAAGTTC ACACTGGACA TGGAAAACAG CATCATGGCA
GAGGTTGTGG ACAAGAAGAT CAGCTTCGAT GAAGCGGCCA AGGCCTGGGT GAAAGCGCAT
CCTGAACGGT TGGATGGGTG GTTGGCCGGT GTTACCACCA AGGCCGATGG TGATGCCCTG
GAGGCCGTCA AAGCTAAACT GTAA
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| Protein sequence | MHKFSAAVFV LALSATTAHA ADSDAQCSTV KMADPGWSDI ASTNAVARLL LESLGYQVKI
DSLAVPIIYG GLKDGQVDAF LGNWMPAQQG FHDKFIANGD VQQLSRNLEG TEFTLAVPDY
VWNAGVKDFA DLQKHAGQFD KKLYGIGSGA PANLSLKKII EENEFNLGQW KLVESSEQAM
LAQVDRAVKK QQFITFLGWT PHPMNVKLKM HYLTGGEKWF GSKGEVYTLT RKGYPQACPN
AAKLLGNLKF TLDMENSIMA EVVDKKISFD EAAKAWVKAH PERLDGWLAG VTTKADGDAL
EAVKAKL
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