| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0072 |
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| Symbol | |
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| ID | 5191855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 76927 |
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| End bp | 78573 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640584513 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_001265431 |
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| Protein GI | 148545329 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.010293 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0125106 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATCAG CCGATTCTAT CTTCGACTAC GTGGTCGTAG GGGCCGGTCC CGCCGGATGC
CTGCTGGCCA ATCGTTTGTC CGCCGACCCT TCCTGCCGCG TGCTGCTGCT GGAGGCGGGG
GGCCGCGACA ATTATCCCTG GATCCACATC CCCGTCGGTT ACCTCTACTG CATCGGCAAC
CCGCGCACAG ACTGGTGCTT CAAGACCGAG GCACAGCCTG GCCTCGGCGG TCGCGCTTTG
GGTTATCCAA GGGGCAAGGT GCTAGGTGGC TGTTCGTCGA TCAACGGCAT GATCTACATG
CGGGGCCAAG CCGCCGACTA TGACCATTGG GCCGCGCAAG GCAACGACGG CTGGGCGTGG
AAAGATGTGT TACCCCTGTT CAAGGCCAGC GAAAACCACT TTGCCGGCGC CAGCGAGCAC
CATGGCGCGG AGGGCGAATG GCGGGTCGAG CGCCAACGCT ACAGCTGGCC GATTCTTGAT
GCTTTCCGTG ATGCCGCCGA GCAGAGTGGT ATTGGCAAGG TCGACGATTT CAACACCGGC
GACAACCAGG GTTGTGGATA TTTTCAGGTC AACCAGCGCA GTGGGGTGCG CTGGAACGCT
TCCAAAGCTT TCCTGCGGCC GATCAAGGAT CGCGCCAACC TCACTGTGCT GACCGGCGTG
CAGGTTGACC AGGTACTGCT CGACAACACC CGCGCAAGGG CGGTGAAGGC GCTCTGGCAA
GGGACCTGGC ATGAGTTTGC GGCGCGCCGC GAGATCATTC TCTGTGCTGG GGCGGTAGGT
TCACCGGGCA TTCTCCAGCG CTCCGGCATC GGCCCGCGTC AGTTGCTGGA AAGCTTGGGC
ATTGGTGTTC GCCACGATAT GCCAGGCGTT GGTGGCAACT TGCAGGACCA CCTGCAACTG
CGCCTGATTT ACCAGATCCG CAACACCCGT ACCTTGAACC AGATGGCCAA CAGCCTGTGG
GGCAAGATGG GCATGGGCCT GCGTTACCTC TACGACCGTA GCGGGCCGCT GGCCATGGCG
CCGAGCCAGT TAGGCGCGTT CGTGCGTTCA AGCCCTGAAC AGGCCACCGC CAACCTTCAG
TATCACGTGC AGCCGCTGTC ACTGGAACGC TTCGGTGAGC CGTTGCATCA GTTCCCGGCC
TTTACGGCTT CGGTGTGCAA CTTGCGCCCG GTCAGTCGCG GGCGCATCGA CATCTGCAGC
ACCGACATGA ACAGCACGCC GCTGATCGAC CCCAATTACC TCAGTGCTCC GCAGGACTTG
CGGGTTGCTG CCGATGCCAT TCGCCTTACC CGGCGTATCG TCCAGGCCCC TGCCCTCGCT
GCTTTCGAGC CCAAGGAATA TTTGCCGGGC CCAGCGCTGC AAAGCGAGGA AGAACTGTTC
GAGGCCGCTG GCAAGATCGG CACCACCATC TTCCACCCGG TCGGTACCTG TCGCATGGGC
AACGGTGCCA TGGACGTTGT GGATAACCAG CTGCGCGTGC ATGGCATCCC CGGTCTTCGT
GTCGCTGATG CTTCGATCAT GCCGCAGATA ACGTCCGGCA ATACCTGTTC CCCCACCCTG
ATGATCGCCG AAAAGGCGGC GCAACTGATC CTCAAAGGAG CGGCTACCCA GACCTACCTG
AACGAAGACG CGTTACCGAC GCCCTGA
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| Protein sequence | MPSADSIFDY VVVGAGPAGC LLANRLSADP SCRVLLLEAG GRDNYPWIHI PVGYLYCIGN
PRTDWCFKTE AQPGLGGRAL GYPRGKVLGG CSSINGMIYM RGQAADYDHW AAQGNDGWAW
KDVLPLFKAS ENHFAGASEH HGAEGEWRVE RQRYSWPILD AFRDAAEQSG IGKVDDFNTG
DNQGCGYFQV NQRSGVRWNA SKAFLRPIKD RANLTVLTGV QVDQVLLDNT RARAVKALWQ
GTWHEFAARR EIILCAGAVG SPGILQRSGI GPRQLLESLG IGVRHDMPGV GGNLQDHLQL
RLIYQIRNTR TLNQMANSLW GKMGMGLRYL YDRSGPLAMA PSQLGAFVRS SPEQATANLQ
YHVQPLSLER FGEPLHQFPA FTASVCNLRP VSRGRIDICS TDMNSTPLID PNYLSAPQDL
RVAADAIRLT RRIVQAPALA AFEPKEYLPG PALQSEEELF EAAGKIGTTI FHPVGTCRMG
NGAMDVVDNQ LRVHGIPGLR VADASIMPQI TSGNTCSPTL MIAEKAAQLI LKGAATQTYL
NEDALPTP
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