Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0071 |
Symbol | |
ID | 5191281 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 75805 |
End bp | 76692 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640584512 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001265430 |
Protein GI | 148545328 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.328388 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00942011 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTCGACT GGAATGATCT GCGGTTTTTC CTCGAGTTGC AGCGCAGCGG CCGCCTGCTG ACCGCCGCCA AGCGCCTGAA CACTACCCAC AGCACCGTGG CCCGGCATAT CGAGAGCATC GAGCAGAGCC TGGGGACCGC GCTGTTCGTG CAGCATGCCC AGGGCTACGA GCTGACCCCC TCGGGCCAAG CCCTGCTCAA GCATGCCGAA GCCATGGAGA ACGTCGCCTT GCTGGCACAA GAGGAAATCA CCCAGGCCAT CACCCCGCTG GGCAAGATTC GTCTGGGGGT AACCGAAGGC ATCGGCATCA TGTTCTTCAC CCCACGCATG AACGCGTTGT TCGAGCGCTA CCCCGGCCTG GAGGTGGAAC TGGTAGCGGT GCCGCGTTTC GTCAGCATCC TCAACCGCGA GGCAGAAATC AGCATCCATC TGGAGCGACC CAACGCCGAC CTGCTGATCA CCCGCAAACT CACCGACTAC CGCTTGGCGC TGTACGCCAG CCAGGACTAC CTGGACCGCG CACCGCCACT GCGCAACCGC GAAGACTTGG CCCGGCACAG CTGGATCGGC TACGTCGACG ATTTGCTGTT CAGCCAGGAA CTGCTGTTTC TCAACAGTTT CTGCCGAGCA CCCAACGTGG TGTTTCGCAG CACCAGCGTG ATCGCCCAGC AAGCCGCCGC CCGCGCCGGG CTGGGCATCG CCGTGCTGCC CAACTACATG GCCCGCCACG ACCCGACACT GGTGCGCGTG CTGCCGGGAG AAACCATCCA GCGCAGCTAC TGGATCTGCA CCCGCCGTGA GCTGCACAAG TCTGTGCGCC TGCGGGTGGT GTGGGACTAC CTGCTGGCGT TGTGCGCGGC CGAACAGAGC GAGTTGCTAG CCGAGTAG
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Protein sequence | MFDWNDLRFF LELQRSGRLL TAAKRLNTTH STVARHIESI EQSLGTALFV QHAQGYELTP SGQALLKHAE AMENVALLAQ EEITQAITPL GKIRLGVTEG IGIMFFTPRM NALFERYPGL EVELVAVPRF VSILNREAEI SIHLERPNAD LLITRKLTDY RLALYASQDY LDRAPPLRNR EDLARHSWIG YVDDLLFSQE LLFLNSFCRA PNVVFRSTSV IAQQAAARAG LGIAVLPNYM ARHDPTLVRV LPGETIQRSY WICTRRELHK SVRLRVVWDY LLALCAAEQS ELLAE
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