Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0057 |
Symbol | |
ID | 5194381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 58189 |
End bp | 61350 |
Gene Length | 3162 bp |
Protein Length | 1053 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640584498 |
Product | CzcA family heavy metal efflux protein |
Protein accession | YP_001265416 |
Protein GI | 148545314 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.899246 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00920883 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTTTGAAC GTATCATCAG ATTCGCCATC GAGCAGCGCA TCGTAGTAAT GATCGCCGTT CTGATCATGG CGGGTATCGG TATCTACAGC TATCAAAAGC TGCCCATCGA TGCGGTACCC GATATCACCA ACGTCCAGGT GCAGATCAAC ACTGCAGCGC CTGGTTACTC GCCCTTGGAA ACCGAACAAC GGATCACGTT TCCAGTTGAA ACGGCCATGG CCGGTCTCCC GGGCCTTCAG CAGACCCGTT CCCTGTCTCG CTCTGGCCTG TCTCAGGTCA CCGTGATCTT CAAGGATGGC ACTGACATCT TCTTTGCCCG CCAGTTGATC AACGAGCGGC TGCAGGTTGC GAAGGAACAG CTGCCAGAAG GTGTAGAGGC CGTCATGGGT CCGGTATCTA CCGGCCTCGG CGAGATCTTC CTGTGGACTG TTGAAGCCGA AGATGGCGCG GTCAAAGAGG ACGGTACGCC GTACACCCCG ACCGACCTGC GCGTGATCCA GGACTGGATC ATCAAGCCTC AGCTGCGTAA CGTCCCGGGT GTGGCCGAGA TCAATACCAT CGGCGGTTAT GCCAAGCAGT TCCTGGTTGC GCCGGATCCA AAGCGCCTGG CTACCTACAA GCTGACACTC AATGACCTGG TCGCAGCGTT GGAAAGTAAC AACGCCAACG TCGGTGCCGG CTACATCGAG CGTAATGGTG AACAGTTGCT CATCCGTGCA CCGGGTCAGG TAGGCAATAT CGAAGACATC GCCAACATCG TGATCACCAG TGTGGATGGT GCACCGATTC GCATCAGCAG CGTTGCTGAC GTCAGCATCG GTAAAGAGCT CCGTACAGGT GCTGCTACTG AGAACGGCCG CGAAGTCGTG CTCGGTACCG TGTTCATGCT GATTGGTGAA AACAGCCGCA CCGTATCTCA AGCTGTCGCC GCCAAATTGG CGGACATCAA CCGCACCCTG CCAAAGGGCG TGGTGGCTGT GACTGTTTAC GACCGTACCA ACCTGGTTGA AAAAGCCATC GCGACGGTGA AGAAGAACCT GGTGGAAGGC GCGATCCTGG TTATCGCCAT TCTGTTCCTG TTCCTCGGCA ACATCCGTGC GGCTCTGATC ACCGCGATGG TGATTCCGCT GTCCATGCTG TTCACCTTCA CAGGCATGTT CAACAACAAG GTCAGTGCCA ACTTAATGAG TTTGGGGGCA CTCGACTTCG GCATCATCGT CGACGGTGCC GTGGTTATTG TAGAAAACGC GATCCGTCGA CTGGCTCATG CGCAACATAA GCATGGCCGC ATGCTCACCA AAACCGAACG CTTCCACGAG GTCTTTGCCG CGGCGCGAGA AGCTCGCCGG CCGCTGATCT TCGGTCAGCT GATCATCATG GTGGTGTACC TGCCGATCTT CGCCCTCACC GGCGTCGAAG GCAAAATGTT CCACCCGATG GCCTTCACCG TTGTGATGGC GCTGCTGGGT GCAATGGTCC TGTCCGTTAC CTTTGTTCCT GCAGCTATTG CCATGTTCGT CACTGGCAAG GTGAAGGAAG AGGAAGGCGT GGTCATGCGC ACAGCTCGAC TGCGCTATGA ACCGGTTCTG CAATGGGTGC TGGGACATCG GAACATCGCT TTCTCGGCCG CAGTAGCCTT GGTCGTGCTC AGTGGTTTGC TGGCAAGTCG TATGGGTAGC GAGTTCATCC CAAGCCTCAG TGAGGGTGAC TTTGCGATGC AGGCCATGCG TGTGCCTGGA ACGAGCCTCA CTCAATCTGT CGAGATGCAG CAGCGTCTGG AGAAAGCGGT GATTGCGCAG GTGCCTGAAG TTGAGCGGAT GTTCGCACGC TCGGGTACCG CAGAAATTGC ATCTGACCCG ATGCCGCCGA ACGCCTCTGA CGCCTACATC ATGCTCAAGC CTCAGGATCA GTGGCCTAAC CCGAAGAAGC CTCGTGATGA GCTGATTGCT GAAGTGCAGA AGGCCGCAGC GGGTGTTCCA GGAAGCAACT ACGAGTTGTC GCAGCCAATC CAACTGCGTT TCAACGAGCT GATTTCGGGC GTGCGTAGTG ACGTCGCTGT GAAAGTCTTC GGCGATGACA TGGACGTGCT CAACAACACC GCCAACAAGA TCGCGGCAGC GCTCAAAGCG GTCCCGGGCT CATCGGAAGT GAAAGTTGAG CAGACATCCG GCCTGCCGGT GCTGACCATC AACATTGACC GCGAAAAAGC AGCACGCTAC GGCCTGAACA TCGCGGATGT TCAGAACTCG ATCGCTATCG CCGTGGGTGG CCGTCAGGCC GGCACGCTGT ATGAGGGCGA CCGTCGGTTC GACATGGTAG TACGCCTACC AGAGACCGTT CGCACCGACG TAGCGGGTAT GTCCAGCTTG CTGATCCCGG TACCTGCCAA TGCGGCACAG GGTGCCAATC AGATCGGCTT CATCCCGCTG TCCCAGGTCG CCAATCTGGA CCTGCAACTG GGCCCGAACC AAATCAGCCG CGAGAACGGC AAACGTCTGG TTATCGTCAG CGCCAACGTT CGAGGCCGCG ATCTGGGGTC CTTCGTTGAG GAGGCGACCG CATCGCTGGA CAAGAAGGTG CAAATCCCTG CGGGCTACTG GACGACTTGG GGGGGCCAGT TCGAGCAGCT GCAGTCGGCT GCCAAACGCC TGCAGATCGT TGTTCCAGTC GCCTTGCTGC TGGTCATGAC CTTGTTGTTC CTGATGTTCA ACAACCTGAA GGACGGCATG CTGGTCTTCA CCGGTATTCC ATTCGCACTC ACCGGTGGTG TTGTGGCGTT GTGGCTGCGG GACATCCCAC TGTCGATCTC GGCAGGTGTC GGCTTCATTG CACTGTCCGG CGTTGCAGTA CTGAACGGCC TGGTGATGAT TGCCTTCATC CGCGGGCTAA GGGAGGAGGG ACGAACGCTC AGACAGGCAG TCGATGAAGG TGCATTGACC CGTCTGCGAC CTGTTCTGAT GACAGCCTTG GTAGCGTCCC TGGGCTTCAT CCCGATGGCT TTGGCCACCG GCACCGGTGC CGAAGTTCAG CGGCCATTGG CGACGGTGGT GATTGGCGGG ATCCTGTCCT CCACCGCACT GACCTTGCTG GTACTGCCTG CCCTGTATCA CTGGGCACAC CGCAAGGATG AAGACGGCGA CGAGGCCGAA GTGGTTAGCT AA
|
Protein sequence | MFERIIRFAI EQRIVVMIAV LIMAGIGIYS YQKLPIDAVP DITNVQVQIN TAAPGYSPLE TEQRITFPVE TAMAGLPGLQ QTRSLSRSGL SQVTVIFKDG TDIFFARQLI NERLQVAKEQ LPEGVEAVMG PVSTGLGEIF LWTVEAEDGA VKEDGTPYTP TDLRVIQDWI IKPQLRNVPG VAEINTIGGY AKQFLVAPDP KRLATYKLTL NDLVAALESN NANVGAGYIE RNGEQLLIRA PGQVGNIEDI ANIVITSVDG APIRISSVAD VSIGKELRTG AATENGREVV LGTVFMLIGE NSRTVSQAVA AKLADINRTL PKGVVAVTVY DRTNLVEKAI ATVKKNLVEG AILVIAILFL FLGNIRAALI TAMVIPLSML FTFTGMFNNK VSANLMSLGA LDFGIIVDGA VVIVENAIRR LAHAQHKHGR MLTKTERFHE VFAAAREARR PLIFGQLIIM VVYLPIFALT GVEGKMFHPM AFTVVMALLG AMVLSVTFVP AAIAMFVTGK VKEEEGVVMR TARLRYEPVL QWVLGHRNIA FSAAVALVVL SGLLASRMGS EFIPSLSEGD FAMQAMRVPG TSLTQSVEMQ QRLEKAVIAQ VPEVERMFAR SGTAEIASDP MPPNASDAYI MLKPQDQWPN PKKPRDELIA EVQKAAAGVP GSNYELSQPI QLRFNELISG VRSDVAVKVF GDDMDVLNNT ANKIAAALKA VPGSSEVKVE QTSGLPVLTI NIDREKAARY GLNIADVQNS IAIAVGGRQA GTLYEGDRRF DMVVRLPETV RTDVAGMSSL LIPVPANAAQ GANQIGFIPL SQVANLDLQL GPNQISRENG KRLVIVSANV RGRDLGSFVE EATASLDKKV QIPAGYWTTW GGQFEQLQSA AKRLQIVVPV ALLLVMTLLF LMFNNLKDGM LVFTGIPFAL TGGVVALWLR DIPLSISAGV GFIALSGVAV LNGLVMIAFI RGLREEGRTL RQAVDEGALT RLRPVLMTAL VASLGFIPMA LATGTGAEVQ RPLATVVIGG ILSSTALTLL VLPALYHWAH RKDEDGDEAE VVS
|
| |