| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0048 |
|---|
| Symbol | |
|---|
| ID | 5192808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 49622 |
|---|
| End bp | 50605 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640584489 |
|---|
| Product | ribonuclease III |
|---|
| Protein accession | YP_001265407 |
|---|
| Protein GI | 148545305 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.650268 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000105467 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACAT TACATCGCTT TCCCGAGCGC CCTGATCCCT TGTTAACCAT CGTGGTCCCT
TGCTTCCAGG AAGAGGAAAC CATCCCCGAG TTCCACCAGC GAATCACCCG CGTGGTGAAG
CGCTTACCCG TCTCCTGCGA AATCCTCTAT GTCGACGACG GCAGTAATGA CCGGACGGCC
GACATTCTTC GCCACTATCA GGATGGGTCA TCTGTACGTT GCCTGTCCCT GAGTCGCAAC
TTCGGCAAAG AGGCTGCACT GAGCGCCGGG ATAGACCATG CCCGTGGCAG TGCGCTGATC
TTCATTGATG TCGACCTGCA GGATCCACCA GAGCTCATCG CGGCCATGGT GGACTACTGG
CAACGCGGCT ACGACGTGGT GAACATGCAG CGCAACCTGA GAATCGGTGA TTCGTGGTTC
AAGCGCATGA GTGCCCGGGC TTACTACTGG GTCATGCAGC GCCTGGTGGA GAAGGTGGAC
ATGCCGGCCG ATGTCAGCGA TTTCCGATTG ATTGGGCCTG CGCCGCTGGC AGCCCTGCGG
GCCCTGGATG AACGCTCCAG GATTCTCAAA GGCATGATCG GCTGGGTAGG CTTTCGTACC
ATCGAACTGC CCTACAATCG CACTGTTCGC CATGCCGGGA GCACCAAATG GAATGCAGCT
GGCCTGTTCA ATCTGGCCAT CGAGAGCATC GTCAGCTTCT CTCGCAAACC ACTGCGCATT
TTCAGCCTCA TCAGTTTCGG TCTTTTCGTC TCCAGCATCT GCTACATGCT TGCGTCGCTT
GTGGCAGGCA GTTTCGACAT CCATCACCTG ATCGTCGGAA TGGCTTCATT CATGTGCGTC
GGTGTCGCCA TGGTGGGGGA GTACCTGGGC GTGACACTCG CGGAAGTGAA GCGCCGGCCT
CTCTATTTCC TGAAGCACAG CAACAAGGCA GATCCCGTGT CACTCCACCC TTCGATGGCT
TCGATCGAGG GTAAGAAATG CTGA
|
|---|
| Protein sequence | MQTLHRFPER PDPLLTIVVP CFQEEETIPE FHQRITRVVK RLPVSCEILY VDDGSNDRTA
DILRHYQDGS SVRCLSLSRN FGKEAALSAG IDHARGSALI FIDVDLQDPP ELIAAMVDYW
QRGYDVVNMQ RNLRIGDSWF KRMSARAYYW VMQRLVEKVD MPADVSDFRL IGPAPLAALR
ALDERSRILK GMIGWVGFRT IELPYNRTVR HAGSTKWNAA GLFNLAIESI VSFSRKPLRI
FSLISFGLFV SSICYMLASL VAGSFDIHHL IVGMASFMCV GVAMVGEYLG VTLAEVKRRP
LYFLKHSNKA DPVSLHPSMA SIEGKKC
|
|---|
| |